2024-04-19 17:50:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_012541850 3401 bp mRNA linear MAM 31-DEC-2019 DEFINITION PREDICTED: Sarcophilus harrisii argonaute RISC catalytic component 2 (AGO2), transcript variant X2, mRNA. ACCESSION XM_012541850 VERSION XM_012541850.3 DBLINK BioProject: PRJNA596784 KEYWORDS RefSeq. SOURCE Sarcophilus harrisii (Tasmanian devil) ORGANISM Sarcophilus harrisii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045426.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 31, 2019 this sequence version replaced XM_012541850.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sarcophilus harrisii Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3401 /organism="Sarcophilus harrisii" /mol_type="mRNA" /db_xref="taxon:9305" /chromosome="1" /cell_line="91H" gene 1..3401 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns" /db_xref="GeneID:100935023" CDS 448..3033 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_012397304.1" /db_xref="GeneID:100935023" /translation="
MYSGAGPALTAPPTPPSPMQATYTFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 727..951 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 979..1131 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1132..1494 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1288..1290,1333..1335,1375..1377,1387..1389, 1441..1443,1462..1464,1468..1470) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1627..2904 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2038..2040,2050..2052,2086..2097,2104..2106, 2128..2130,2137..2139,2149..2151,2161..2163) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2242..2244,2248..2250,2458..2460,2872..2874) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
aaaaacccggcagtctgtacagtacagcccgcaccgcacgttgcaagctcccctttctcgtcagccgtcacaactgggcatgctcatttagtcagggctgggttttcccccctcccttcttggtcgcaagtagctttccttcccccccccccctcttttttcccctcttctgcactacaacggctccccggctcccggcggctggccggccctccctccctccttccttccctcttcccttccctccctctctctccccccttccttccctccctccttccttccttcccttcccctccactcctctgccggcacagtgtcgcgtaaacctgtttggtgaggcgcccgcctgaaggcgcagggtcggaccgcactcgcggctgctgcgttgggggggcccgattctcactccttggctcccgggagcccccctgcccagggacagacatgtattcgggagcaggacccgcacttacggctcctccaacaccaccctcaccaatgcaggcaacatatacctttaagcctccacctagaccagactttgggacttctgggagaacaatcaagctgcaggctaatttctttgaaatggacattccaaaaattgacatctatcattatgaattagatatcaagccagagaaatgccctagaagagttaacagagaaatagtggagcatatggtccagcactttaaaacacagatctttggggatcgtaaaccagtatttgatggaagaaaaaacctctatacagcaatgcctcttcccattgggagagataaagtggagttggaggtcacattgcctggagaaggaaaagaccggatatttaaggtggccataaaatggatgtcatgtgtgagtctacaagctttgcatgatgcgctctccggtcgcctgcctagtgtcccttttgaaaccattcaggcattggatgtagtgatgagacatttaccatccatgaggtatacacccgtggggcgatcattttttactgcatcagagggatgctcaaaccctcttggtggaggaagggaagtttggtttggattccatcaatcagttcgaccctcactttggaaaatgatgttgaacattgatgtttcagcaacagccttttacaaggcacagccagtaattgagtttgtttgtgaagttttggatttcaaaagtattgaagagcaacagaaacctctgacagattcccaaagggtaaagtttaccaaagaaatcaaaggtctaaaggttgagataacacactgtgggcaaatgaagagaaagtaccgtgtgtgtaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaagagagtggccagactgttgaatgtacggtggcacagtattttaaagacagacacaaattggttctacgttatcctcaccttccatgtttacaagttggacaggagcaaaagcatacataccttcctcttgaggtatgcaacatagtggcaggacagagatgtataaagaaactgactgacaatcaaacctctactatgatacgggcaactgcaagatcagcacctgatcggcaagaagagatcagcaaattgatgcgaagtgcaagtttcaatacagacccttatgttcgtgagtttggcataatggttaaagatgaaatgacagatgtcactggccgggtcttgcagccaccatcaatcctctatggaggcaggaataaagcaattgctacacctgtccagggggtttgggatatgaggaataaacagttccacactggaattgaaatcaaggtctgggcgattgcttgctttgcacctcaacggcagtgtactgaagtccatcttaaatccttcacagaacaactcagaaagatttcaagagatgcaggaatgccaatccagggtcagccatgtttctgcaaatatgcccaaggagcagatagtgttgagcctatgtttaggcacttaaagaacacatatgctggactgcaattagtagtggtcattctgcctggaaaaactcctgtctatgcggaagtgaaacgtgttggggacaccgtgctgggcatggccacacagtgtgttcagatgaaaaatgtgcagagaaccacgccacagactctgtcaaatctttgcttaaagatcaatgtcaagctaggaggagtaaacaatatcttacttccccaaggaaggcctccagtatttcagcagcctgtcatctttttgggtgcagatgtcactcaccccccagcaggagatggaaaaaagccttctattgccgcagttgtagggagcatggatgcccaccccaatcgttattgtgcaacagtgcgtgttcagcagcatcggcaagaaatcatccaagatttggctgcaatggtccgagaacttcttattcaattctataaatcaacacgcttcaaaccaactcgcatcatcttctatagggatggtgtttctgagggtcaatttcagcaggttcttcatcatgagctgttggccatccgagaggcatgtattaaactagaaaaagattaccagcctggaattacatttattgttgttcagaaaaggcaccacaccaggcttttctgtaccgacaaaaatgaacgggttggaaagagtggaaatattccagcagggacaacagtagacaccaaaattacccacccatctgaatttgatttttacctgtgcagccatgctggtattcagggaacaagcaggccttcacattatcatgtcctttgggatgacaatcgtttttcttcagatgaactacaaattttgacttatcaactgtgtcatacctatgtgcgctgtacacgctctgtgtccatccctgcaccagcctactatgcgcacctggtggccttcagggccagatatcatttggtggataaagaacatgacagtgctgaaggaagccacacgtctggtcagagtaatggcagagatcaccaagcacttgcgaaagcagtacaggttcatcaggacacgctgcgtaccatgtactttgcttaacatgttttagtgtttagcgatttagtacagagttggattcacatgagaccagctacactcagaccaactgttgcccagcccttccatgacagccagcaaggagcaggatgcatctaggttcttttccatgtgcaagaaagaaagccgtccctgcattaagacttggattttgagctgcagacctgtaaaactcccctccccctgccctcatctttcactcccatccctgacactgttgggaatgtggtttgccaaaatctataggctgctttttcagaaaacagacccaagtttcctaaaattaattcaagagctattatctcagggctttaaaaacaaacaaacaaaaaaaaaaaaccacacacaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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