2024-05-04 23:59:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011967343 2369 bp mRNA linear PRI 30-MAR-2015 DEFINITION PREDICTED: Mandrillus leucophaeus retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_011967343 VERSION XM_011967343.1 DBLINK BioProject: PRJNA279492 KEYWORDS RefSeq. SOURCE Mandrillus leucophaeus (drill) ORGANISM Mandrillus leucophaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012108696.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mandrillus leucophaeus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2369 /organism="Mandrillus leucophaeus" /mol_type="mRNA" /isolate="KB7577" /db_xref="taxon:9568" /chromosome="Unknown" /sex="female" /tissue_type="heart" gene 1..2369 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 21 ESTs, 8 Proteins" /db_xref="GeneID:105530022" CDS 180..872 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_011822733.1" /db_xref="GeneID:105530022" /translation="
MPAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(399..413,417..419,468..470,486..488,525..527, 531..536,543..548,552..560,564..569) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(405..407,414..416,534..536,543..548,555..557) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 408..566 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacagccacagagaggggaagagaaaacagggacggtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaaacccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagccccaccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgaggggccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggttcgggtgccgtggcagccccgagacttcctgaggccccggcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggctgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccaccccatcgccacctgtcctgctggcagcggaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccagggacgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctatgaggctgtgagtggcggggccgctgactctgtaagatgagtgtacatctttctgccgctcccactccccatcagcagagctgcccgctctccaggctcccagtccccccgaaatgacaataacggcagctcccgcgagcctggtctcctttcacagtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggtacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaaggtcgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtgggacctcgtgtagaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggccggcgtctgctctgtccaacccagttgcattgcccaagagctctgagcaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcatctccagcccgggctccccagatcactcccagatcaccggggcaccccatctccaggtggcacctcatacaccagtcctgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagattttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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