2024-05-03 08:58:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011943448 2381 bp mRNA linear PRI 30-MAR-2015 DEFINITION PREDICTED: Colobus angolensis palliatus retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_011943448 VERSION XM_011943448.1 DBLINK BioProject: PRJNA279495 KEYWORDS RefSeq. SOURCE Colobus angolensis palliatus ORGANISM Colobus angolensis palliatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012115377.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Colobus angolensis palliatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2381 /organism="Colobus angolensis palliatus" /mol_type="mRNA" /isolate="OR3802" /sub_species="palliatus" /db_xref="taxon:336983" /chromosome="Unknown" /sex="female" /tissue_type="heart" gene 1..2381 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 6 Proteins" /db_xref="GeneID:105512828" CDS 182..874 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_011798838.1" /db_xref="GeneID:105512828" /translation="
MLAPVEGTDLPGAGRQAWGSPALSLTVASPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFGPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(401..415,419..421,470..472,488..490,527..529, 533..538,545..550,554..562,566..571) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(407..409,416..418,536..538,545..550,557..559) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 410..568 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacagccacagagaggggaagagaaaacagggacagtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagaacgcatgctggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgacggtagcctccccagccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgagggaccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccagatgtatacagccgtgaggagctggcggccaaggtgcacctccctgaagtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcccgaggccccagcactgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggacctggaccgccggctgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttggtcccaccttcgcagacggctttgccctggaggaggcgtccctgcgactgctggccaaggaacacgcacaggctctggacagggcctggccgccggcttgagcctgctgccctcctgggccccctcctcggttcgacctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagacaggctgctgggtcctccgcccccatcctgtcccccaccccatcgccacccatcgtgctggcagcggaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccggggatgggggccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgtgagtggcggggccgctgactctgtaacatgagtctaaatctctctgccgctcccactccccgtcagcagagctgcccactctccaggctcctggtccccccgaaatgacaataacagcagctcctgcgatcctggtctcctttcacggtgcactcaccatgtgagcgctcccctctccattgcgccctggacctcgggcacagtcgtcagcccattctacagagagggaaactggggctcagacaggaggccaggtccccaaggtcgcacggctgggagtgggtgaagctgcctttcagacccatcaccggccccaccatctgaggcacggcagcaggttctggagtgagggtggggccctcgtgtggaggcaggctggtgctggctgtgtcgtcatcagcccctgttcctcacatccccacagaccccaggccccgtgcatgtcccccagccctgaggaggcacggctggcgtctgctctgtccgacccagttgcattgcccaagagctctaagcaagaaggctgtcgcggggccgagaacccgctgtgcctggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgggacagaagtgcggcaccagggcaggagctacgatagctaccctcctcgtctccagcccgggctccccaggtcactcccagatcaccggggcaccccatctccaggcggcacctcacacaccagtcctgtggcccgacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtatgcacaagaaagatttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgcactcccagtgctttgggacgccgaggtgggaggatcgcttgagaccagcctgggtgacagagcaagacccagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacgcttgtcatcccagcgacccgagaagctgaggcaggaggatggcttgagcccagaaggtcgaggctgcagggagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccctgactcaaaacaaataaataaaacacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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