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2024-03-29 15:24:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_011752382           15389 bp    mRNA    linear   PRI 24-APR-2018
DEFINITION  PREDICTED: Macaca nemestrina argonaute 2, RISC catalytic component
            (AGO2), mRNA.
ACCESSION   XM_011752382
VERSION     XM_011752382.2
DBLINK      BioProject: PRJNA279145
KEYWORDS    RefSeq.
SOURCE      Macaca nemestrina (pig-tailed macaque)
  ORGANISM  Macaca nemestrina
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_012011067.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 24, 2018 this sequence version replaced XM_011752382.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Macaca nemestrina Annotation Release
                                           101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15389
                     /organism="Macaca nemestrina"
                     /mol_type="mRNA"
                     /isolate="M95218"
                     /db_xref="taxon:9545"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
     gene            1..15389
                     /gene="AGO2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 mRNAs, 390 ESTs, 34 Proteins,
                     and 99% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:105488387"
     CDS             1077..3518
                     /gene="AGO2"
                     /codon_start=1
                     /product="protein argonaute-2"
                     /protein_id="XP_011750684.1"
                     /db_xref="GeneID:105488387"
                     /translation="
MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
     misc_feature    1212..1436
                     /gene="AGO2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1464..1616
                     /gene="AGO2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1617..1979
                     /gene="AGO2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1773..1775,1818..1820,1860..1862,1872..1874,
                     1926..1928,1947..1949,1953..1955)
                     /gene="AGO2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2112..3389
                     /gene="AGO2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2523..2525,2535..2537,2571..2582,2589..2591,
                     2613..2615,2622..2624,2634..2636,2646..2648)
                     /gene="AGO2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2727..2729,2733..2735,2943..2945,3357..3359)
                     /gene="AGO2"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tcgccatgttggccaggctggtctcgaactcctgacctcaggtgatctgcccactcggcctcccgaagtactgagattacaggcgtgagccacccctcccagccaattatagaatttttaatttgctatgcttccaagccttgccaggatgataactttgtatgtaactttgtcagaatgtataggcttagtttggttttttttcacattgtgctgaaagcatgaacttttggagaatgtttagtgagtcctcattgttgtggagaggttcttggaaactgcatttttaagcaaaacaaagtacatcaggttcttgaataatgttttgttttaatgttgattaggaaaaaaatatttgttaaacatcatgtcacttaaacttgccgtttccaagaactgtcaacagtgttaagtgaactgtgtgctcctcgcctgctctcgcggtaggtgggggctccacgctcctgcctgcaaggtcttcctgtgctggaaatgggtagaggcatctccctgggtcccctccttagggatcagaatctacttggtttcttcagacaaattaaaatgtcatcgatgccctgggaggatatacctcagtggtatttcttggcatatttaattatggaaaaaaatctttctttatttatagtaaacctttttgagttgcaaatattttactgtgagcatgattgatttagaattatgagaaagcaacttagtctgcataatttgtttataacattggtcatgttgagtatatttggagcctcgaaggcatggaatattgagcagagtgtggaaaataaagcggtttttgacaccgtgcttcattttgcaggtactaactgacttgtccatttgctaagcctcatcccacccggcagttttcctgcccagcagctgttaccgcccccattctcacttggcccccgtgccagttcggaagcctttgagcagcacttgcgcctcctgcaccgccgccaccccccatccaaggatatgccttcaagcctccacctagacccgactttgggacctccgggagaacaatcaaattacaggccaatttcttcgaaatggacatccccaaaattgacatctatcactatgaattggatatcaagccagagaagtgcccaaggagagttaacagggaaatcgtggaacacatggtccagcactttaaaacacagatctttggggatcggaagcccgtgtttgacggcaggaagaatctgtacacggccatgccccttccgattgggagggacaaggtggagctggaggtcacgctgccgggagaaggcaaggatcgcatcttcaaggtgtccatcaagtgggtgtcctgcgtgagcttgcaggcgttacacgatgcactttcagggcggctgcccagcgtcccttttgagacgatccaggccctggacgtggtcatgaggcacttgccgtccatgaggtacacccccgtgggccgctccttcttcactgcgtctgagggctgctccaaccctcttggcgggggccgagaagtgtggtttggcttccatcagtctgtccggccttctctctggaaaatgatgctgaacattgatgtgtcggcaacagcattttacaaggcacagccagtaatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaattaaaggtctaaaggtggagataacgcactgtgggcagatgaagaggaagtaccgcgtctgcaatgtgacccggcggcccgccagtcaccaaacattcccgctgcagcaggagagcgggcagacggtggagtgcacggtggcccagtacttcaaggacaggcacaagttggttctgcgctacccccacctcccatgtttacaagtcggacaggagcagaaacacacctaccttcccctggaggtctgtaacatagtggcaggacaaagatgtattaaaaaattaacggacaatcagacctcaaccatgatcagagcgactgctaggtcggcacccgatcggcaagaagagatcagcaaattgatgcgaagtgcaagtttcaacacagatccatacgtccgtgaatttggaatcatggtcaaagatgagatgacggacgtgactgggcgggtgctgcagccgccctccatcctctacgggggcaggaataaagcgattgcgacgcctgtccagggcgtctgggacatgcggaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcgtgctttgccccccagcgccagtgcacagaagtccatctgaagtccttcacagagcagctcagaaagatctcgagagacgccggcatgcctatccagggccagccgtgcttctgcaaatacgcgcagggtgcggacagcgtggagcccatgttccggcacctgaagaacacgtatgcaggcctgcagctggtggtggtcatcctgcctggcaagacgcccgtgtacgctgaggtcaagcgcgtgggagacacagtgctggggatggccacgcagtgcgtgcagatgaagaacgtgcagaggaccacaccgcagacgctgtccaacctctgcctgaagatcaacgtcaagctgggaggcgtgaacaacatcctgctgccccagggcaggccaccagtgttccagcagcccgtcatctttctgggagcggacgtcactcacccccccgccggggatgggaagaagccctccattgccgccgtggtgggcagcatggacgcccaccccaatcgctactgcgccactgtgcgcgtgcagcagcaccggcaggagatcatacaagacctggccgccatggtccgcgagctcctcatccagttctacaagtccacgcgcttcaagcccacccgcatcatcttctaccgtgacggcgtctccgaaggccagttccagcaggttctccaccacgagttgctggccatccgtgaggcctgtatcaagctggaaaaagactaccagcccgggatcaccttcatcgtggtgcagaagaggcaccacacacggctcttctgcacggacaagaacgagcgggttgggaaaagtggaaacattccagcaggcacgactgtggacacgaaaatcacccaccccaccgagttcgacttctacctgtgtagtcacgctggcatccaggggacaagcaggccttcgcactatcacgtcctctgggacgacaatcgtttctcctctgacgagctgcagatcctcacctaccagctttgtcacacctatgtgcgctgcacacgctccgtgtccatcccagcgccagcatactacgcccacctggtggccttccgggccaggtaccacctggtggataaggaacatgacagtgctgaaggaagccatacctctgggcagagtaacgggcgagaccaccaagcactggccaaggcggtccaggttcaccaagacactctgcgcaccatgtactttgcttgacatgttttagtgtttagcgactgtgtaccgagtgggattcacgagaccagctaccctcagaccaacagatggccagcccttccgtgacagccagcattgaacatgagacgtcattgattttattagattctccgttttccagaatgccttccgtcccagatttcacacttggattttgaactgcagacctgtatgagaacccaatgtcataggaaatatggtttgctaaaatctataagctgcttattaaaatagagtcccgtgtttcctaaaaatctaaaaccagtctatgaactcagggctttaaaacatttttaatttatttggtcattcaatttacttgtttttaatacatgattctctatgaaattgatgggctcaaactagctgtgaatcttctgagagtgaaagcaacacaaaacacaattgtggttttaaagccttgaacattctgatgttgtcactaaagttgatttccgggcgatgctcgtgtgccgctggcgtggctcacccaaggtccttgaccgagggccggtggccatgcagaggcctccgcaggtgccgagttctgccagcactgcccttcacctggcctgaactaaggagcagtggcagaaggtgggccccgtgtgtttacagcatttccaggtccagagaggttggcagacaagtgccattttaataaaaatgtatttaaaaaaagaaaaaagacaatatactgacagtctaatcatcagatttgtcctataggactgtgacatttattttccaaagtttttaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttatgtctttaatgtaagagaaaattatatatatctggtttgcagtattaatgtgatagatagatgctgtttttttcattttattgactatggggtgcttctgtgatctgtttagcatatcaagagtgttttggagcctggagacgagactgcctctcagttcttagtgcttaaggacaggaatatgcagttaacttaatgtgacagcaacccgcttccccccgtggagactgtgcagtgtgtaccctcgggaggggcgggtatgctctctgcgccgctcgccgccctccctgccgcctcatccccctgtgtcactcactcagctgatgaagcacaagtggaaattacttattctggcattgctgggaaacacattcgcgtgtcgggacgcactcctctccgtgtgcgcttttgtcagatgactttcatagatctatgcactgagatttgtagaaagctgtcggtggtggctctgctgggcgtgaggccgtcagtcacagcgaaggagcctgcctggccctgggaggcccaaggatggcagggccagcagaaggcatgggccattcttctggggtttgcatgtggggtcccaggcgtggggttgccagtctagaaactgttgcactaagactgacactgcggacaattttgaaggctaacaacagacaactctgtttgtgctgagtgcgctttttgtccctgtacagttttagtaagactcaaatccgcgttccgtgtagaggcgtcaggaaggaggcgagcctcccctagtgctgctgtgcgctccttagatcccctcttcctgctgctgttccctccccggccctgagcgacacttacctcggcactgtggtggggtggggtgccaaaggagctgcctcctgctgagcggcacccccgccgcctttgtgctcagctgcttcggaggcagcaggaggggcagcaggccgccggtggggggtcgccagacacctcgcctggatgttggcggcaatgacaaaagggatgactattatttgtgaagacgtgtactcagagtggtgtgtgtgtgtacgcacgcgtgtgtccctgtgtgtgtgtgagtgtcttattaatggcattagtctcttctggctgtattttttttttttttatctttttaaatgacagaagcccccactctaagaaatcgcaattccctgttgttttattggcaagtggcactttctcctgttttcagaaggatacagacatgctcgtagcttaaattaacagatgcattcaagctaaggagggaatcttgtgactagtaacttttcaaattggaaattagattagtttccagccatttttagaatcatctggaactatgtgtctcgaaggtgtgtttcttgcacctgcatcaggctctctgtctgggggatggtggttcttgtttaaaatgcagatttgtgggcctgctgccacctcctgagtgcggtacttcggggctggcctgggcatctgtgtctaagtgatggcctgcagccctgggctccctggggtctgaggacccagctctggcagcacccggcagggaggaggtgcttcctgagcagatgcctgggacagactgggctggcagaaaagtaggactacaattttttttttttatcattttgaaggaaaagttttctttttagtgggccagagtactttgagaagggtacttttttatagccctatgcttgttttataaaacttttaatattaaaaacattaatagaccaaacatctccagctgggtcagctgaatacctttgtacatgtctgatgattcagagtttaaatggctgtagttacaatttctcaggtaaacaattgttttctcaaatttttaccaatccctgcattattaggataaattttgagacagtgtaaaacctcaaagtacagtagggtaagtcccagccctgttcacgtggaagccagaggtggccccttccccagcatctgatcctgtgggtgcctggggcctcaccatccttccccgtccaatgctgcccgcccgggcctgttgagatttgaggggtgcccactcgctggctttgtccccatcccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgaaaattatgttgtagaagtctgggtttgtttaaaagaaaaactgggatttttatctcatctctttaaaagaggtctcctgattcgattcctgtactgggactcttcctggtattttttacatgttcactttttaaaaacattgatgtactcccatccttttaccactaacctatcacatttgacaagttcttgctgtaatgacgaatctattaacgaacaccaggggagccgtggaaagctgccctcgtgtgtgagagccgtgcggtgacgcaaagccaccatcctgttgtttgtgtgtcctaagctcagattttcctggtttggataaattttgtaaaactgggcatagctgtacttttagaaagggattgttttccttaggttttggttttctctggttcaagcggtctttacatgcagacattttatagcacattagggtctcccttttcttttcaagatgatgttgctttccggtggtggtgtcacactcctttgaatgaatgtttgcactctagaaccacgaacgatgcgtgcccattgtacagcttgcccaagagggaactgttggaagcgggcggtgacctccgccttgtttgtttgaggctgacccaaactgctgtcactgatgtttaccccggtgactcagcgcccgttagaacagatcatgtcagttcagttcctgtagtggggttagtaggtggggggttttactgttgttgttatttgttacttttattgctattaaatgcaaatattgctatttattttttcctttctgctctggtttggtttggccgacacagatattccagtgcatgtggtacctaatggatgtgatagaaatgatttccccaacttttataaattacctaatgtttaccttcaagtttgctggatgatttatttttgaaagccacaaatgtgatttttctggatgaattgtttttcttatatatgcagcaatgtaattttacattgatctgcgggatggtttaaattttatttttacaaggcagtttttcagtcaaattatatatttgatacaatatgctaaggatagaccggccacacgtcaggcagccgggacaccagagtgtccccaggaggcctttggggctggggcggcttctcggctgcccgtgctggtggcccgtggcttgctccctgcacctctgggaactggttgagtccttcggtgggactgtgacccgctggacagttaaaaggatttttcatgggcatttttctacacataaggcagttccattaggaggagctttagaagtcgacataatccagacagtggacaatcccagtggcccagacaagccatacgacattttcctgtgacctctctctgacccatctctcacgctcatgagaaaaggaatgtacaataactagaaacagaaactccctcagtgctcatgcgcctcacttgcagaactcgagtgttttatttatgtttgaagtccttccccaaagtgaccgagaagttgcgctctcgctgccgtgccagcagtttcgtctgctgtgatgctcttcggtgcagatgcactgcacctgtgacttcgtcttgggggtgcccctgttacacacacacatgctgacccttttctgtaaggaaaatcttcaactcaaaataattgcactgattttttgacaattctttttacgatgtcccactttgcatctgctgtactcgtttgagatgactgtaaatagatttatgttaggagaagtgatgtgaatgcaccacgcggctctcttgtggagacactgcctcgtattcagtattatgtgttagagttgtgtggacttaactctgttccgcccttgagcttcgtatctgttgaccatttatgaaggacaagttcgcctcattttctttttcttttgaagggaagttttagatctttaacatactaggagaacatggtctcttggtgcctgatgatttagtcctaagcagactcattgcagtcttgtgaacactgttgtggtctgtttgagtcctcgtcgcttaccatggctctccaaagcatggtcttcgcgttccacccagcctgggacagtccggatgggaggcgtctgctccgcctgctaccaggatgcgagggcctccttgcgtctgtggtcagagtcattttaaagccatgaggtcactgttgtgtcaaagctgtcatttgtgcccgttgttttgctagagtagcagtgtgtgctgtagcccccgtgtgtcactctgtggtcaggctaccctgtgtcacccccagcaagaagtatttcagcccagaccagtctgtgtgtgtgtccgagtcacaccagtgccattacggtgccctcgcttctgcttctttcagtatgttttgccatgttattgtctaaagtgaatgtattggcttagccaaatcactacagaaggtggttcctaaataccttttagtttaaaaaaaatgcagataaaggctacctctgaattctcaatacatcatcatgtttgctcttaagtgtagctgtccacactgaaaacagccaatatgttgcctgaataaactgaattgtgaacatctatctgttcagttctggcttgaaaatgtgtgtgccatactgtgacccacgggcagcccctcctcctctgctgtgtcaggtggaccagggtcacctccatgctgcgcagctttgagattctaggattctacgactggcacgagtggcatgggagggttctctgcacgggacagcatgctgtccttcaggccggcaggagcctgcacaggtctgtgtgtggcaaaagcttggaacagcctgtgtcctgcctggcttttcactttcctgtttaatataagaaagcactttttttctgctttacgaatggggtgaaaatggcctcctctgtcctctcctcccttttataccctctgtaaaatcacaaaggtgcttcaacaccgactgtcgtgcaaataacacatttaaaatagttgcatggtttcaaggacagtgcagatgtaattggcctttgactttgggaccttgggttactctcactccctactgcaaaacaaactaagggttgaaaacaaagcattctgttcaaatccagggccctttgtttgaaagaacacagggcccacagctggtgttttgaagtagaagttcccactagtggtgcagtggaccgtctgaggctgacttgcgggaagtcggtcctgggaggctctgaacacccctccctgtgattaaccactttgctgtcagaaatgtcattttcccctacactgtgctgtgggcctgggcctccttctcttctctctttgggttccgtatgttccccgatcttcaggttagcgctcaccccagtttctccatgagtttacttctgagttggcagccgatggtttacagttggaggcatctgggtgtttggaggtggccccgctcttgtgttggttgctcatcagagattgagtttggccccggcggttctactacgtcactacctggaagcagttgcctttaacactgctgttt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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]