2024-05-03 08:10:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011747817 2663 bp mRNA linear PRI 24-APR-2018 DEFINITION PREDICTED: Macaca nemestrina retina and anterior neural fold homeobox 2 (RAX2), transcript variant X2, mRNA. ACCESSION XM_011747817 VERSION XM_011747817.2 DBLINK BioProject: PRJNA279145 KEYWORDS RefSeq. SOURCE Macaca nemestrina (pig-tailed macaque) ORGANISM Macaca nemestrina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012010576.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 24, 2018 this sequence version replaced XM_011747817.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca nemestrina Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2663 /organism="Macaca nemestrina" /mol_type="mRNA" /isolate="M95218" /db_xref="taxon:9545" /chromosome="Unknown" /sex="female" /tissue_type="blood" gene 1..2663 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 6 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:105485450" CDS 611..1165 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X2" /protein_id="XP_011746119.1" /db_xref="GeneID:105485450" /translation="
MFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPTLPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(692..706,710..712,761..763,779..781,818..820, 824..829,836..841,845..853,857..862) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(698..700,707..709,827..829,836..841,848..850) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 701..859 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
accgcgcccgtctgtgaatggtgaactcctattcatacctcaagacccagttaaaagggcctctgccccttgtgtccaaaagagccaactgcagtgccttcacctctgggacctcagcttccccaaccccctctgacctctgtgagtcctaagacacctttttctgcccccagcagataaaagtattaacaatgggcattcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagccagggaaactgaggcccagggaggaagagccccgtggcatcttatggcgaggggcggtggagcccggcagactatccccccagcctccacctggagctgcagccctccgcccaccctgccctccctcctggctcaggacagcccggggaccgagtgggaggtgccgcctcaattaatcaccttgagctaatcctcccccacccaaccccgacccggctcaggtctggcagggccaggccacagcagacgcggcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccaacgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacctgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctaggccagggacggggaccctcctcccctcctgaggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgagtggcggggccgctgactctgtaagatgagtgtacatctctctgccgctcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaatggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccatcagcccattctacagagaggaaaactggggctcaggcaggaagccaggtccccaaggttgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcccgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcactggggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcagtgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaccaaacctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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