2024-05-04 23:38:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_011747810 2918 bp mRNA linear PRI 24-APR-2018 DEFINITION PREDICTED: Macaca nemestrina retina and anterior neural fold homeobox 2 (RAX2), transcript variant X1, mRNA. ACCESSION XM_011747810 VERSION XM_011747810.2 DBLINK BioProject: PRJNA279145 KEYWORDS RefSeq. SOURCE Macaca nemestrina (pig-tailed macaque) ORGANISM Macaca nemestrina Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012010576.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 24, 2018 this sequence version replaced XM_011747810.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca nemestrina Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2918 /organism="Macaca nemestrina" /mol_type="mRNA" /isolate="M95218" /db_xref="taxon:9545" /chromosome="Unknown" /sex="female" /tissue_type="blood" gene 1..2918 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 ESTs, 7 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:105485450" CDS 728..1420 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X1" /protein_id="XP_011746112.1" /db_xref="GeneID:105485450" /translation="
MPAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSRQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPTLPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(947..961,965..967,1016..1018,1034..1036,1073..1075, 1079..1084,1091..1096,1100..1108,1112..1117) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(953..955,962..964,1082..1084,1091..1096,1103..1105) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 956..1114 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
accgcgcccgtctgtgaatggtgaactcctattcatacctcaagacccagttaaaagggcctctgccccttgtgtccaaaagagccaactgcagtgccttcacctctgggacctcagcttccccaaccccctctgacctctgtgagtcctaagacacctttttctgcccccagcagataaaagtattaacaatgggcattcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagccagggaaactgaggcccagggaggaagagccccgtggcatcttatggcgaggggcggtggagcccggcagactatccccccagcctccacctggagctgcagccctccgcccaccctgccctccctcctggctcaggacagcccggggaccgagtgggaggtgccgcctcaattaatcaccttgagctaatcctcccccacccaaccccgacccggctcaggtctggcagggccaggccacagcagacgcggcgccgggcccgctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggccgtgacaaccacagagaggggaagagaaaacagggacggtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgccggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtctcgccaggtgggagccatgttcctgagcccgggcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccaacgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacctgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctaggccagggacggggaccctcctcccctcctgaggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgagtggcggggccgctgactctgtaagatgagtgtacatctctctgccgctcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaatggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccatcagcccattctacagagaggaaaactggggctcaggcaggaagccaggtccccaaggttgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcccgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcacggctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcactggggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcagtgtgcaccaggcactggggacacggcagtaagcacaagaaagatttttttttctttttaacctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaccaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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