2024-04-27 04:41:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010878662 4684 bp mRNA linear VRT 11-MAY-2020 DEFINITION PREDICTED: Esox lucius NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_010878662 VERSION XM_010878662.4 DBLINK BioProject: PRJNA629749 KEYWORDS RefSeq. SOURCE Esox lucius (northern pike) ORGANISM Esox lucius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047583.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 11, 2020 this sequence version replaced XM_010878662.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Esox lucius Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4684 /organism="Esox lucius" /mol_type="mRNA" /isolate="fEsoLuc1" /db_xref="taxon:8010" /chromosome="15" /tissue_type="liver, spleen" /dev_stage="adult" /country="Czech Republic: Jihlava River, Danube basin" /lat_lon="49.218 N 16.717 E" /collection_date="29-Nov-2018" /collected_by="Martin Reichard" gene 1..4684 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns" /db_xref="GeneID:105015472" CDS 914..4438 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_010876964.1" /db_xref="GeneID:105015472" /translation="
MALFPAFAALSNTKDENSPKDLEWLSNQSFRTDDALSIHQRATEKANEAEPAQTRLVTKEREDKNHISSKKKKKEKEKKKKKRKKHKKSGEPSPANSGSDSDTIYPSDLLKKAQSTSPSEEVKGQDEGSFVWLDDLQTPTDRPFCVDRRADRANWEYKSLYRGDIARYKRKGSSSLGLNPRSQAVSWAESGPEKKKSDRRNRPVRYFSPSVRQHLRSDGQPVLPSPPPEGGAITSPFIPVPPCLEVEVEGMAKGQSSWVNPLGVYDSATSLWLQGKGKAEHGRAEEPPPAPRDPSAALLAERVEDFNRRLRENPEDTHAWLRFVRFQDEVASGPGAFGDPPENETERRKSSVRATLEKKVAILDRAVDSNPGCVELKLERLRLCRELWEPAVLLKEWKKLVFVHPNSAPLWKKYLLFVQSHFSTFSVSKVNGVYGKCLSTLAAVQDGSMVSHDALPGTEEHMLGIFLQQCHFLRQAGHSEKAVCLFQGMLDFTFFKPDTVKDLPTRQQVEFFETFWDSGEPRVGERGARGWRAWMTQQERGGWLQPNEPDDEDDEDQEESEVKDMTWPKWKIWLDVETSREAVHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVRPDLQLCLLLSFLHFLGLPADPSCYSAPSWSVLLDDLTLLEEVHDQDAPLTSYDLLVPGVSPVGHMTSLQGTRKGAGLCKQGEEFLDNMFQMILPLLPAQERAILSLHWIQYEKLKVLRCARGRNKKRLKAQGKRSKRLAKRLLKEPENRGRLSLWREYAHLEWLLGNLEEARKVFDTALGLGVSGGLADPALCDLCLLYAQLEVEEAWRVGSGGCGLGVNVATVTSSPAVYVLAKLAEGSSYAPFSGQLAPVAVLKARKTYEQAVESYLPGLVEGASGLGHAKKPRRVKGLVGCYALFQYLTVGIDATDAVYNLARERLEQQPNTAAQEQVVGELDWTRSTALECEALAVQRAALLRHHTDASVYPLGHLRLALTSALVRFPSSAPLWRLYVQVENRYHSAGRARRFFHSVTKVSASVVPRLFAISAEQRRKQLVDSVQRAGSYGDTLSTLPENGLSNRIRCLFENAIATEHGVHCPLLWRMYMNFLVSEGKVETGRGIFYKALQDIPWAKGLYMDAAQLFPDHVQEFLDLMTEKELRLRVPMEEVDILLED"
misc_feature 1340..1636 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(1340..1366,1373..1378,1388..1393,1397..1399, 1403..1447,1454..1462,1466..1474,1496..1504,1520..1525, 1529..1534,1541..1561,1580..1591,1610..1636) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1829..2827 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
tttgcggactgtaaaatactctccgcacctcgtgccaatgaactgacaggtttcaggcgcgctctactttatgcaacgcactgctttatatctgcggaagaatactttaaaatttactggccagtctctttgttgaagctggagaaattgcggttctttttgagacaccgctgctcattggttgcagtggacctgcaatattctgctcactgtacgagctcccaagattggctacgttggatctgcaatgcgtcaagcaatggcgattatgttacggattgtttcaggaaaacgatgtagcaggacagtctatatttgaccacaaagcattttgtcaatattgtattatttactttcgacaaaacgtgtttttagtctgtagtttctcaaaagtgtagactacctcttcatctgacagtggctcgatttgaggagtgggctgattcgcgattggtcactacaaatctacacggaactattttgtagtcgcgaaatttaaaatgacaggataagggatatgacatttccattgaataaattgtcttctattttcaacaaaatgttgtaaattcgagtactgaatttaaatcaatgtttactatatcgaaacaaaatgtttaataataaacgtcaatggtgatacctatttggcaataatctctaaccctgcagcattggatcgacaaaaacgtgttaacggtttgtccatgttcacgcagaggttatcgaattagttttgtatggtcatgcaataagaagcatatttaagtaatgaaaaaatcagtatggaagatgaccttagacagtagacaaacttccttaaaattcaagctgtctccagcaagtaactgacgcgttgaatgtgacgtcatattcacgcgactgtttacatccacacgaaaacattggcaacatggctctttttccagcttttgcagctttatcaaatactaaagatgagaattcacctaaagatttagaatggctgagcaatcaaagtttccgcaccgacgatgccctttctatccaccagcgagccactgagaaagccaacgaagcagaaccggcacaaacaagacttgttacaaaagagagggaggataagaatcacatctcatctaagaaaaagaaaaaggagaaggagaagaagaagaagaaaaggaagaagcacaagaagagtggagaaccctccccagcaaacagtggctcagattcagatactatctaccccagtgatctcctgaaaaaagcacagagcacttctcccagtgaggaggtaaagggtcaggacgaggggtcatttgtgtggttggatgacctccagacccccacagatcgacctttctgtgtggacaggagagcggaccgggccaattgggagtacaaatctctctacagaggagacatcgccaggtacaagaggaaaggcagttcctccctgggcttgaacccgcggtcccaggctgtgagctgggctgagtcgggcccagagaagaagaagtcggacaggcgaaacagacctgtccgctacttttctcccagcgtccgccagcacctgcggtcagacggccaacctgtgctccccagtccccctccggaaggcggcgccatcacctcgcccttcatcccggtgcccccctgcctggaagtcgaggtagagggcatggccaaggggcagtcctcctgggttaaccccctgggggtgtatgactcggccacctccctgtggcttcaggggaaggggaaggccgagcatggccgggcggaggaaccgcctcccgctcccagggacccctcggccgccctgctggctgaacgcgtggaggacttcaacaggaggctgagggaaaacccggaggacacgcatgcgtggctccgcttcgtccgcttccaggacgaggtggcgagtggccccggggcgttcggcgacccccccgagaatgagacggagcggcggaagagctcggtgcgggccacgctggagaagaaggtggccattttggatcgagcggtggacagtaaccccggctgcgtggagctgaagctggagcgactgcgactgtgcagagagctgtgggagcccgccgtcctgctgaaagagtggaagaagctggtgttcgtgcaccccaacagtgcccccctgtggaagaagtacctgctgttcgtgcagagccacttcagcaccttctcggtgtctaaggtcaacggcgtgtacggcaagtgtctgagcacgctggcggcggtgcaggacgggagcatggtgtctcacgatgcgttgccgggcactgaagaacacatgctaggcatcttcctgcagcagtgtcatttcctcaggcaggctggccactcggagaaagctgtgtgtctgttccagggcatgctggacttcacctttttcaagccagacactgtcaaggacctgcccacaagacaacaggtggagttctttgagacattctgggacagtggggagccccgggtcggggagagaggggccaggggatggagagcctggatgacccagcaggagagagggggttggctacaacccaatgaaccagatgacgaagatgacgaagatcaggaggaatctgaggtaaaggatatgacctggcccaagtggaagatctggttggatgtggagacttcacgtgaggctgtccattggttgccgtggaggccggacaagaccaagggccaatcagtggaggactgtgaggacccagatcgacaggtcctgtttgatgacattggtccgtctatgatccggctggtccgcccagacctccagctctgtcttcttctgtccttcctgcacttcctgggtcttcctgctgacccatcctgttacagcgccccctcctggagtgtgcttctggatgacctgactctgctggaagaagttcacgaccaagatgcccctttgacttcatacgaccttcttgtccctggggtcagccctgtaggtcacatgacctctcttcagggcaccaggaagggggcaggactgtgtaagcaaggggaggagtttctagacaacatgttccagatgattctgcctttgctgcctgctcaggagagagccatcctttcactgcattggatccagtatgagaagctcaaggtgctgaggtgtgcacgcggcaggaacaagaaacgcttaaaagcccaggggaagaggagcaaacgcctggctaaacgtctgcttaaagagccagagaaccgcggccgcctcagcctgtggagggagtacgcccacctggaatggctgctggggaatctggaggaggcccgcaaggtgtttgacacagccttgggcctgggtgtgtcaggggggctggcggacccagccctgtgtgacctctgcctgctctacgcccagctggaggtggaggaggcctggagggttgggtcgggcggatgtgggcttggggtgaacgtggcgacagtcacatcttcgcccgcggtctatgtcctcgccaagttagcggaggggagttcgtacgcccccttctctggacagttggctccagtggctgttctgaaggcccggaagacctatgagcaggctgtggagagctacctgcctgggctagtggagggggcctctgggttgggacacgccaagaaacccaggcgggtcaaaggtctggtaggttgttatgccctcttccagtacctgactgtggggatcgacgctaccgacgcggtctacaatctggcaagggagaggctggagcagcagcccaacacggcagcccaggagcaggttgtcggcgagctcgattggacccggagcaccgccttagagtgcgaggccctggctgtccagcgggcggctttgctgcgccaccacaccgacgctagcgtctacccgctcggccacctcaggctggcgctgacctcggcgctggtccgcttcccctctagcgcccctctgtggcggctgtacgtacaggtggagaaccgctaccacagtgctggaagggctcgccgcttcttccacagcgtgaccaaggttagcgccagtgtggtgccgcgcttgttcgccatcagcgcagagcagcggaggaaacagttggtggactctgttcagagggctggttcctatggcgacaccctgtcaaccctgccggagaatggcctgagcaaccgtatccgttgtctgtttgagaacgccatagcaacagagcacggggtccactgtcctttgctctggaggatgtacatgaacttcctggtgtcagaagggaaggtggagactggaagagggatcttctacaaggctctccaggacatcccgtgggcgaagggtttatacatggacgcggcgcagctcttccctgatcatgtgcaggagttcctggacctaatgacggagaaggagctccgactgagggttcccatggaggaggtggacattctgctggaggattgaggccatgaactacttccacagtttcctggaacctggcttttttagacagactgtggacacagaagccatgcacatgctaatagaaccaccaagtgtctgtgaacaaaataatgttgctcttcaaacagatgtgtttttctgggttaaataccttttccatattttgatggagtgaatatcgatttttatgtcaaggagatcaaaatgataaatagattactgtgaataaatgatttgtttccttac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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