2024-04-27 09:49:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_010645255 2470 bp mRNA linear ROD 23-APR-2020 DEFINITION PREDICTED: Fukomys damarensis argonaute RISC component 1 (Ago1), transcript variant X5, mRNA. ACCESSION XM_010645255 VERSION XM_010645255.1 DBLINK BioProject: PRJNA625221 KEYWORDS RefSeq. SOURCE Fukomys damarensis (Damara mole-rat) ORGANISM Fukomys damarensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022900935.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Fukomys damarensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2470 /organism="Fukomys damarensis" /mol_type="mRNA" /isolate="Sample0158" /db_xref="taxon:885580" /chromosome="Unknown" /sex="female" /tissue_type="blood from cranial vena cava" /country="USA: Houston Zoo, Houston, TX" /collection_date="05-Sep-2016" /collected_by="Joseph P. Flanagan, Kelcie Pletch, Christine Molter, Maryanne Tocidlowski, Lauren Howard, Judilee Marrow, Andrea Lee, Jess Jimerson, Katie Plaeger, Erin Neer" gene 1..2470 /gene="Ago1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:104876986" CDS 108..2402 /gene="Ago1" /codon_start=1 /product="protein argonaute-1 isoform X5" /protein_id="XP_010643557.1" /db_xref="GeneID:104876986" /translation="
MEAGPSGAAAGPYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERLLGLYPIYRPALREGKGNYHLLNFSYVPDTVQGVFLTATL"
misc_feature 183..2258 /gene="Ago1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1275..>2279 /gene="Ago1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1695..1697,1707..1709,1743..1754,1761..1763, 1785..1787,1794..1796,1806..1808,1818..1820) /gene="Ago1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
gccgagcccggcccgggagcccaagcggcgagagtgcggggtccctaggcccctcacgctggactccacagtctctgggccgcctgacctctgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcccctatctgccccccctgcagcaggtgttccaggcacctcgtcggcctggtattggcactgtggggaaacctatcaagctcctggccaattactttgaggtggacattcctaagatcgacgtctaccactacgaggtggacatcaagccggataagtgtccccgtcgagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcaccgcactgcccattggcaatgagcgggtcgacttcgaggtgacaatccctggggaggggaaggatcgaatttttaaggtctccatcaagtggctagctattgtgagctggcgcatgttgcatgaggccctggtcagtggccagatccctgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccagtgattgagttcatgtgtgaggttctggacatcaggaacatcgatgaacagcccaagcctctcacggactcccagcgtgttcgctttaccaaggagatcaagggcctgaaggtggaagtgactcactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgctagccatcagacgtttcctttacagctggagagtggacagactgtggagtgcacagtggcacaatatttcaagcagaaatataaccttcagctcaagtatccccaccttccctgcctccaagttggccaggaacaaaagcatacctacctgcctctagaggtctgtaatattgtagctgggcagcgctgcattaagaagttgactgacaaccagacttcaaccatgataaaggctacagctaggtcggctccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaagaatttggaatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaaccaaggtgtctgggacatgcgagggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccacaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgtttctgcaaatatgcacagggagcagacagtgtggagcccatgttccggcatctcaagaacacctactcagggctgcaactcattatcgtcatcctgccggggaagacgccagtatatgctgaagtgaaacgtgttggagatacacttttgggaatggcaacacagtgtgtgcaggtgaagaatgtggtgaagacctctcctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggcggcattaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatattcctgggagcagatgttacacaccctccagcaggggatgggaaaaaaccttctattacagcagtagtaggcagtatggatgcccaccccagccgatattgtgccactgtgcgggtgcagcgaccacggcaggagatcattgaagacttgtcctacatggtgcgtgagctgctcatccagttctacaaatctacccgcttcaagcctacccgcatcatcttttatcgagatggggtccctgaaggccagctcccccagatcctccactatgaacttctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgactccttggcctataccctatatatagaccagctctcagagaagggaaagggaactaccatttattgaacttctcctatgtgccagacactgtacaaggcgtcttcctcacagcaaccctgtgagattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcactcacccttttgagt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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