2024-05-04 20:38:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009696043 1378 bp mRNA linear VRT 21-OCT-2014 DEFINITION PREDICTED: Cariama cristata vimentin (VIM), partial mRNA. ACCESSION XM_009696043 VERSION XM_009696043.1 DBLINK BioProject: PRJNA263623 KEYWORDS RefSeq; includes ab initio. SOURCE Cariama cristata (Red-legged seriema) ORGANISM Cariama cristata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Cariamiformes; Cariamidae; Cariama. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009605612.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Cariama cristata Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1378 /organism="Cariama cristata" /mol_type="mRNA" /isolate="BGI_N322" /db_xref="taxon:54380" /chromosome="Unknown" /sex="male" gene <1..1378 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 167 ESTs, 64 Proteins" /db_xref="GeneID:104158406" CDS <1..805 /gene="VIM" /codon_start=2 /product="vimentin" /protein_id="XP_009694345.1" /db_xref="GeneID:104158406" /translation="
LLIVLLFGQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature <26..634 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
attgctaatcgttcttctctttggtcaggatgttgacaatgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgatgttcgccaacagtatgaaagcgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcagtctctcacctgtgaagttgatgcccttaagggaagtaatgaatccctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaaccaacattgagtcgcagccaatggttgacactcattcaaagagaacacttctaattaagactgttgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagacgcatacttattaatgcaggagaaattcttaccagcaagatttaaaaagtccatgtcttaaaggaaaaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagattattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctcttgatgtgttctaatttgttaatttcatgactttctggaaagccataacaatgtaatgctggaattactatacagttgacatctctagtactgattgtgtggaatgctgttttttcagtttaactagataaactgtcttctcatttactgcttaggttttggaaccaactaaaatggactataactggcagatgcatgatgtattacaatatttcttatcacttgaataaaatatgatacttcaagctaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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