2024-05-05 00:23:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009470229 531 bp mRNA linear VRT 06-OCT-2014 DEFINITION PREDICTED: Nipponia nippon VCP-interacting membrane protein (VIMP), mRNA. ACCESSION XM_009470229 VERSION XM_009470229.1 DBLINK BioProject: PRJNA253829 KEYWORDS RefSeq; includes ab initio. SOURCE Nipponia nippon (crested ibis) ORGANISM Nipponia nippon Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009001792.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Nipponia nippon Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..531 /organism="Nipponia nippon" /mol_type="mRNA" /isolate="BGI_Y956" /db_xref="taxon:128390" /chromosome="Unknown" /sex="male" /country="China" gene 1..531 /gene="VIMP" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:104017223" CDS 1..531 /gene="VIMP" /codon_start=1 /product="selenoprotein S" /protein_id="XP_009468504.1" /db_xref="GeneID:104017223" /translation="
MAAGEGGTLSAHPVGSLLSSYGWYILLAAVAIYLLVQKVSQSLAARPSSRPGAADAAVEPDVVVRRQEALAAARLRMQEELNAQAERYKEKQRQLEEEKRRQKIAMWESMQEGKSYKGNLKLNQQEVESGASTSSAVPKSKPNKKPLRGGGYNPLSGEGGGTCSWRPGRRGPSAGG"
misc_feature 40..528 /gene="VIMP" /note="Selenoprotein S (SelS); Region: Selenoprotein_S; pfam06936" /db_xref="CDD:429198" ORIGIN
atggcggcgggagagggagggaccctttccgcgcatcccgtgggctccctgctgtccagctatggctggtacatcctcctggccgccgtcgccatctatctcctcgtccagaaggtgtcccagagcctggcggccaggcccagcagccggcccggagcagctgacgcggcagtggaacctgacgtggtggtaagaaggcaggaagctttggcagcagctcggctcaggatgcaagaggagttgaatgcacaagcagaaagatacaaagaaaaacaaagacagcttgaagaagagaagcgaaggcagaagatagctatgtgggaaagtatgcaagaaggaaaaagctataaaggaaacctgaaactgaatcagcaagaagtagaatctggtgcctccacctcatcagcagtcccgaaatctaaaccaaacaaaaagcccttgcgaggaggtggctataaccctctgtctggagaaggaggcggaacttgttcctggagaccaggccggagaggcccgtcagcaggtggatga
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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