2024-09-08 11:40:13, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_009446623 1873 bp mRNA linear PRI 13-MAR-2024 DEFINITION PREDICTED: Pan troglodytes claudin 11 (CLDN11), transcript variant X1, mRNA. ACCESSION XM_009446623 VERSION XM_009446623.5 DBLINK BioProject: PRJNA945513 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086015) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 13, 2024 this sequence version replaced XM_009446623.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028858775.2-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1873 /organism="Pan troglodytes" /mol_type="mRNA" /isolate="AG18354" /db_xref="taxon:9598" /chromosome="2" /sex="male" /cell_line="AG18354" /cell_type="lymphoblastoid" /tissue_type="blood" gene 1..1873 /gene="CLDN11" /gene_synonym="claudin-11" /note="claudin 11; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 82 long SRA reads, 2 Proteins" /db_xref="GeneID:460846" /db_xref="VGNC:VGNC:1780" CDS 173..544 /gene="CLDN11" /gene_synonym="claudin-11" /codon_start=1 /product="claudin-11 isoform X1" /protein_id="XP_009444898.1" /db_xref="GeneID:460846" /db_xref="VGNC:VGNC:1780" /translation="
MIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSAHV"
polyA_site 1873 /gene="CLDN11" /gene_synonym="claudin-11" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccccctccctcatactttgggtggaggcaggaacagtcctctgtccctatcttttggtgtccggacatggccttggcactgtagcatgtggacagccagtgccacggatttcagaacccgcattgccagttgactgcctgctttgtgctacgtgcaggcctgccgcgccctgatgattgctgcctcggtcctgggtctgccggccattttactgctgctgactgttcttccctgcatccggatgggccaggagcccggtgtggctaagtacaggcgggcccagctggctggtgttttgctcattctgctggctctctgcgcccttgttgccaccatctggttccctgtgtgcgcccaccgtgagaccaccatcgtgagctttggctactccctgtatgcaggctggattggtgctgtgctgtgcctcgtgggtggctgtgtcatcctctgctgtgctggagatgcccaggcctttggtgaaaaccgtttctactacactgcgggctctagctccccgactcatgcgaagagtgcccacgtataagagggctgcccggctgcccacagaggtgctgtagatgctgggcccagggccctaggtttgctcgtcacagtgtggggaagcccattcctctgccaggctctaaagccaaaggtctagaaaagcatcctgtctggcattttgtagtcttaacttctccccatttcccccatcttttggttgccttaaaagaaatctctagctcagataatgcccagacatttttttcccatggtgttgccactattagctcttttcttgggcattcttttgctgtttattaaaaatatattatatatattttgtttctttaaatttcaaatgttttgcaaacatcactgagttaggtgggggtggggaagagaaatacaagacacttttttttttttttttaaatagggccttactctgttgctcaggctggagtgcggtggtgtgatctcggctcatgtagcctcaacctccctggctcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcgttcactactacacccagctaatttttaagttttttgtagagatgagggctccctatgttgcccaggttggtctggaactcctggactcaaagtatcctcccgcctcggcctcccaaagtgttgggattataggagtgagccaccacaccggccaagatgcttttcaaactgatacagatgacaatgggagcctcataaagatggcttttgtttcttcccttcaaggtcatttacttgtacgagacagaaaaagatagcattggggacatgggatgagggagggagggcaatagtggaacgaactttccatgggaaactttcccttttgtaagttgagggccaggggtagggatattttttagtttgtgattttgcatttatctgtacatactttttcaagattgatcatttttataaccatggttttcctgaaatcctcagttcatcaatatgaaggaaatgaaccacatagactttatgcaataaataacagtgcaagtgagtataactttaactgatgttccacaaaacatttttgatttcaggtttatatgatgtagtttttaatcgtacattttcatatgcttcaaactaacacatttttaaagctttcccccacttttctctctatttgcattgttagccatcttgaagtgatgttgtttaacataaattgtactgttgaatttggctttacgggtgtaaacactgatggtatatcagtatctgagaccccagactctccaaatactgatggtgcattttattcttgaagtgaaatctgtgcaataaaataacagactgtctgcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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