LOCUS       XM_009434361            2952 bp    mRNA    linear   PRI 11-APR-2023
DEFINITION  PREDICTED: Pan troglodytes retina and anterior neural fold homeobox
            2 (RAX2), transcript variant X1, mRNA.
ACCESSION   XM_009434361
VERSION     XM_009434361.4
DBLINK      BioProject: PRJNA945513
KEYWORDS    RefSeq.
SOURCE      Pan troglodytes (chimpanzee)
  ORGANISM  Pan troglodytes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pan.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072417) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 28, 2023 this sequence version replaced XM_009434361.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_028858775.1-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Pan troglodytes"
                     /mol_type="mRNA"
                     /isolate="AG18354"
                     /db_xref="taxon:9598"
                     /chromosome="19"
                     /sex="male"
                     /cell_line="AG18354"
                     /cell_type="lymphoblastoid"
                     /tissue_type="blood"
     gene            1..2952
                     /gene="RAX2"
                     /gene_synonym="RAXL1"
                     /note="retina and anterior neural fold homeobox 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 6 Proteins"
                     /db_xref="GeneID:468668"
                     /db_xref="VGNC:VGNC:2273"
     CDS             718..1272
                     /gene="RAX2"
                     /gene_synonym="RAXL1"
                     /codon_start=1
                     /product="retina and anterior neural fold homeobox protein
                     2 isoform X1"
                     /protein_id="XP_009432636.1"
                     /db_xref="GeneID:468668"
                     /db_xref="VGNC:VGNC:2273"
                     /translation="

MFLSPGEGPATEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQAMDRAWPPA"

     misc_feature    order(799..813,817..819,868..870,886..888,925..927,
                     931..936,943..948,952..960,964..969)
                     /gene="RAX2"
                     /gene_synonym="RAXL1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(805..807,814..816,934..936,943..948,955..957)
                     /gene="RAX2"
                     /gene_synonym="RAXL1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    808..966
                     /gene="RAX2"
                     /gene_synonym="RAXL1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

tttagtagacagggttttgccatgttggccaggctggtctcaaactcatgatctcaggtgatccgcccgcctcagcctcccaaagtgctggggttacaggcgtgagccactgcgcccggctgtgaatggtgaacttctattcatacctcaagacccagctaaaagggtccctaccccttgtgtccagaggagccaactgcagtgccttcacctctggacctcagcttccccaactgcctctgacatctgtgagttctaagacacatttttctgcccccagcagataaaaatattaacagtgggcattcattaagtgccccctgtatgccaatttctgtgcgatgctctgagaagctgaaatccccccagggtaggtcctagtgtggcagttttacagccagggaaactgaggcccagagagggagaggcccttgccgtcttatggcaaggggccgcggagcctgtaagactatccccccagccacccacttagagccccagccctccatccaccctgccctccctcctggctcagaacagcccaggaccaagtgggaggggccgcctcaattaatcaccttgagctaatcctcccccacgcagccccgacctggctcggctccggcagggccaggccacagcagacgcagcgccgggcccgctggggcaggtgtcccgtggaaatcgacggaggggctgccgtgggcggtgggagccatgttcctgagcccgggcgaggggccggcaaccgagggtgggggtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctctcactacccggatgtgtacagccgtgaggagctggcagccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagctccgagactccccgaggccccagcgctgccgttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcgcagatggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctatggacagggcctggccgccagcctgagcctgccgccctcccgggccccctcctcggcccaacccgagaaccagggacgtgccctggtgacagtcaccatgccttggcctaggccgaggtcatggagcaactgtggtcaggccaggccaccaccactggggagcgggaccagagagacaggctgctgggttccctgcccccatcccgtctcccaccccatcgccacccatcctgctggcagcggactggcccccagtgtcaggcaggaggtgacccaagtattctcaggccaggtgcggggacctcctcccctcctggggcctcagcctcctgtctgttaattgggcgtgggggcctccgaggttcgagggctgcgaggctgtgggtggcgggaccgctgactctgtaagatgagtgtaaatctctctgcttctcctaatccccatcagcagagctgcccactctccaggctcccagtcccctggaaataacaaatagcagcagctcccgcgagcctggtctcctctcaccgtgtgctcgccatgtgagcgctcccctctccgttgtgccctggacctcgggcacagctgtcagcccattctacagagagggaaaccggggcttaggcaggaagccaggtccccaaagtcgcacggccaggagtggatggagctgcctttcagacccatcaccggtcctaccgtccggggcacagcgacaggttctggagagagggtgggtcccgggccaggtgctggtgggcctccaggtggaggcgggctgatgctgggtgtgtcgtcatcgtcagcccgttcctcacgtccccacagaccccaggccctgtgcatgtccccagtggaggcatggccagcatctgctctgtccaacccagtcgcatcgctcaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacggctggcccagtgcagcaggagggggccctgagccatgggatgggacagtctgggccagcgccaccttccgagacagaagtgcggcaccagggcaggagctgcagtagctaccctccccgtctccagcctgggctccccagatcactcccagatcaccagggcaccccatctctaggcggcacctcacacaccagtcctgtggtccaacgcccagccatcacccaatgtcaccgcacaccaggcagtggggacgcggcagtaagcacaagaaagatttttttttttaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagacctgcctgggtgacacagcaagaccccatctccacaaacgtttttaaaatgtgccgggtgtagtggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcacttgagcccagaaggttgaggctgcagggagctgtgatcacaccgctgcactccagcctgtgcaacagagccagaccctgactcaaaacaaataaaaaacaaatctaaaacaaaagacttcagacagtgataagtgatagggagaaaaaaaacccaggaaagtcagatgtggagtgtggcaggggctgcaattttaatagggagttctggaggaggggaggctggcgtgaaggtagagaccgggggcgggagggagaatgtct

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