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2024-03-29 18:44:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_008120670            4742 bp    mRNA    linear   VRT 31-MAY-2016
DEFINITION  PREDICTED: Anolis carolinensis protein argonaute-1 (LOC100556413),
            transcript variant X1, mRNA.
ACCESSION   XM_008120670
VERSION     XM_008120670.2
DBLINK      BioProject: PRJNA60547
KEYWORDS    RefSeq.
SOURCE      Anolis carolinensis (green anole)
  ORGANISM  Anolis carolinensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Toxicofera; Iguania; Dactyloidae; Anolis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_003339035.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 31, 2016 this sequence version replaced XM_008120670.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Anolis carolinensis Annotation
                                           Release 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Anolis carolinensis"
                     /mol_type="mRNA"
                     /db_xref="taxon:28377"
                     /chromosome="Unknown"
                     /country="USA"
     gene            1..4742
                     /gene="LOC100556413"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 22 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100556413"
     CDS             98..2446
                     /gene="LOC100556413"
                     /codon_start=1
                     /product="protein argonaute-1"
                     /protein_id="XP_008118877.1"
                     /db_xref="GeneID:100556413"
                     /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    140..364
                     /gene="LOC100556413"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    392..544
                     /gene="LOC100556413"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    545..907
                     /gene="LOC100556413"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(701..703,746..748,788..790,800..802,854..856,
                     875..877,881..883)
                     /gene="LOC100556413"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1040..2317
                     /gene="LOC100556413"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1451..1453,1463..1465,1499..1510,1517..1519,
                     1541..1543,1550..1552,1562..1564,1574..1576)
                     /gene="LOC100556413"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1655..1657,1661..1663,1871..1873,2285..2287)
                     /gene="LOC100556413"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
tggacatccccaagatcgatgtctaccactatgaagttgatatcaagcccgacaagtgcccgcgcagagtcaacaggtaagggaggttgtggaatacatggtccaacacttcaaacctcagatctttggagaccggaagccagtatatgatggcaagaagaacatctacaccgtcactgccctgccgattgggaatgagagggttgactttgaggtgacaattccaggtgaaggcaaagacaggatatttaaggtttctatcaagtggatggccatcgtgagctggagaatgcttcatgaggccttggtgagcggacagatccccgttcctctggaatctgtccaggcccttgacgttgccatgaggcacctagcatccatgaggtacaccccagtgggccgttccttcttctctcccccggaaggatactatcacccactgggaggaggtcgggaggtctggtttggcttccaccagtctgtcaggcctgctatgtggaagatgatgctcaacatcgatgtgtcagcaacagccttttataaggcccaacctgtcatagagttcatgtgtgaagtcctcgatatccggaacattgacgaacagccaaagcccctgactgactctcagagagttcgcttcaccaaggagatcaaaggtttgaaagtggaagtgactcactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccggcggccagctagccaccaaacgttccccctgcagttggagagcggccagacggtggagtgcacggttgcacaatacttcaagcagaaatacaacctccagctgaagtacccccatttgccatgtctgcaagtcggtcaagaacagaaacacacatatctgcctctggaggtatgtaacatcgtggccggccagcggtgcatcaaaaagttgactgacaatcagacttccaccatgatcaaagcaacagcgaggtccgctccagacaggcaggaggaaatcagccggctgatgaagaatgccagttataacctggacccgtacatacaggagtttggcattaaagtgaaggatgatatgacggaggtgacgggacgtgtcttgccagctccaatcttacagtacggaggccggaaccgtgccatcgccacacccaaccagggggtctgggacatgagagggaagcagttttacaacggcattgagatcaaagtatgggccatcgcttgctttgcccctcagaagcagtgcagggaagaagtcctgaaaaacttcacagaccaattgcgtaagatatccaaggatgcagggatgccaatccagggtcagccctgcttctgcaaatatgcacaaggcgcagacagcgtggagcccatgttccggcaccttaagaacacttactcaggactccagctcatcatcgtcatcctgccagggaaaacaccggtgtatgccgaggtgaagcgagtgggagacacgctccttgggatggccactcagtgcgtgcaagtgaagaacgtggtgaagacgtcgccgcagaccctgtccaacctctgcctcaagatcaacgtcaagctgggagggatcaacaacatcttggtgccccaccaacgttctgcagtctttcaacagccagttatatttctgggggctgatgtaactcatccgccggcaggagatggaaagaagccctcgataacagccgtggtgggaagcatggacgcccacccgagccgttactgcgcgacggtgcgggtccagcgcccccggcaagagatcatcgaggacctttcgtacatggtcagggaactcctcatccagttctacaagtccacccgcttcaagcccacccgcatcatcttctaccgcgacggagtgccagaaggacagctccctcagatccttcactatgagcttctggccatccgcgatgcctgcatcaaactggagaaggactaccagccaggcatcacctacatcgttgtacagaagcgtcatcacacccgccttttctgtgctgacaagaacgaaaggattggcaaaagtgggaacatccctgcaggaacaactgtggacacaaacatcactcatccctttgagtttgatttctacctgtgcagtcacgctggcattcagggtacgagcagaccatctcattactacgttctgtgggacgacaaccggtttacagcagatgagctccaaatcctcacctaccagctttgccacacatacgtccgctgcacccgctccgtctctatcccagcaccagcatattatgcccgcttggtggcctttcgggcacgatatcaccttgtagacaaagagcatgacagcggagaaggcagtcacatatctggccaaagcaacggccgagaccctcaggcccttgccaaggccgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagccgaaattttttacctcactccagaaagctttcagatttgtaggagccatacagaatattttaaaggaagcattgggagcaccttggggcatcccacgagaaatcactgcagggcgccaacagcgttggaggcaggaaaccagcaccctccggggcaaatgcaagagagccgctcgctcgctcgctcgaccggacggacacaccttcttcagtatcgcaagagagactgtctttgtttttcgggcgttccgattccctgaccaaacacggccgcagaagggatccgacttccgattccaaacggaacaggttttggggtgggggaccgaggggtggggggagggagggtggaaacgcaatagtagacgctgggctgtggaacgcttgggtcctccgatgccaaatcaaatgctggtcaggttttgtttccttattatttggggcgggcgggtgggattatggggcaaagggacttgtagagccttaaaacagatgactagatttataaaaactaatattttaggatacaaaatactttaattggtgaagagagaaaaaaaagaaaagaaaccagtagtgtatagatgaattttaacactgtttactcctccccgttaaagaaaaataataattttttcccctttatatatataataataataacgcaaggcacccccagcacttaccacgaagctgagaaggataatttgtcttccatctgttttgaaagtgggttagctgctgcccttttgatgcaacggtggcatacttatacttaactgtgggcgagtgccttaccgcaatgctgcaaaaaccttgacatccattgacaaagcaagccatctccatggtggcctcgatctcccatcttgaaggtgtcaggaggcctttggaaggctcacaaagcttaccgcttcatattcgctcacagcctcatgatgggttaaaattctgtgcacttttagcatgacattagacatgggagagctgctgatatcacctgaagttggtttttttcgttattgcttcccctttttaattttttacacttctgacaaaatggagtacgtcagagagcgaacgtttgcctgccatgtaagcacaaaaaagagaactccattatcaatagatgtcctgatttttttgtatctactgatgattttttttattatcaagtgttatttttgtacaatgaccaggtttattgccaaaacctctcaaatcatactcgtcgtatttcctttattgtgtctccctgctgtcccgagcttgcctttggcctgtttgtaaagcacacgaggtacatttttggtgcttttttgggtgacgcatagacaaacgttggaatgaaataaatgtttttgctatgatgattagttggcttgtccaggaatcacagagcagtccatcgaattcttattatatgtcatagagtattagtttaccaactcacagattggcatcttcatattctttggtcctttttgttctacatacggatatagcataatatctgatcttggaattgtccctttatactctgcttcacaaacccagcagcttcattcttagatcggaatatgaaaatgcactttgcaatgatatagaaatcacgtttgattttgtgttgacaaaataattcttctgtgacagtgattttcaagctctctcttgagcagtaggcatctcagtttggacaaaaagaaggggttattcgtctcataacaggaaagttatttctgctttagtacaaaagcagacgttgcaagaggagaaaacgccatgtgtactcagaccacatgcatttttttcagagttttgtcttaaagagacttcgaaaagatcaaatgggagaaaagatacttgaactttgtttgcattttgggtagtcgtaaccccttttttgtaagcacatcttccgaaaggaaatgccgagcagctcttgtaactcccaggatcaagtgaaagaccttcttttctataaatccttacctctcgtgttgacacgtcctcccaaatgccactttgagacagaatgttaacccatcacaatgctatgcaaagaaaaatggccaaactctgaatagtctttgacacggcctgggcattatgtttcttttcaaccaagatccaaaacaggcaccaatagcttgcgcacagctggtaggattcctggctcggagcctctgagtcccatttcaaattccaaaagacttttaagggttcctctacagcacttgaaggggagggaggcatggttgcatttgcctgttttgtcaagcacaggtccaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]