2024-03-29 18:44:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008120670 4742 bp mRNA linear VRT 31-MAY-2016 DEFINITION PREDICTED: Anolis carolinensis protein argonaute-1 (LOC100556413), transcript variant X1, mRNA. ACCESSION XM_008120670 VERSION XM_008120670.2 DBLINK BioProject: PRJNA60547 KEYWORDS RefSeq. SOURCE Anolis carolinensis (green anole) ORGANISM Anolis carolinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003339035.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 31, 2016 this sequence version replaced XM_008120670.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Anolis carolinensis Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4742 /organism="Anolis carolinensis" /mol_type="mRNA" /db_xref="taxon:28377" /chromosome="Unknown" /country="USA" gene 1..4742 /gene="LOC100556413" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns" /db_xref="GeneID:100556413" CDS 98..2446 /gene="LOC100556413" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_008118877.1" /db_xref="GeneID:100556413" /translation="
MVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 140..364 /gene="LOC100556413" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 392..544 /gene="LOC100556413" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 545..907 /gene="LOC100556413" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(701..703,746..748,788..790,800..802,854..856, 875..877,881..883) /gene="LOC100556413" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1040..2317 /gene="LOC100556413" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1451..1453,1463..1465,1499..1510,1517..1519, 1541..1543,1550..1552,1562..1564,1574..1576) /gene="LOC100556413" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1655..1657,1661..1663,1871..1873,2285..2287) /gene="LOC100556413" /note="active site" /db_xref="CDD:240015" ORIGIN
tggacatccccaagatcgatgtctaccactatgaagttgatatcaagcccgacaagtgcccgcgcagagtcaacaggtaagggaggttgtggaatacatggtccaacacttcaaacctcagatctttggagaccggaagccagtatatgatggcaagaagaacatctacaccgtcactgccctgccgattgggaatgagagggttgactttgaggtgacaattccaggtgaaggcaaagacaggatatttaaggtttctatcaagtggatggccatcgtgagctggagaatgcttcatgaggccttggtgagcggacagatccccgttcctctggaatctgtccaggcccttgacgttgccatgaggcacctagcatccatgaggtacaccccagtgggccgttccttcttctctcccccggaaggatactatcacccactgggaggaggtcgggaggtctggtttggcttccaccagtctgtcaggcctgctatgtggaagatgatgctcaacatcgatgtgtcagcaacagccttttataaggcccaacctgtcatagagttcatgtgtgaagtcctcgatatccggaacattgacgaacagccaaagcccctgactgactctcagagagttcgcttcaccaaggagatcaaaggtttgaaagtggaagtgactcactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccggcggccagctagccaccaaacgttccccctgcagttggagagcggccagacggtggagtgcacggttgcacaatacttcaagcagaaatacaacctccagctgaagtacccccatttgccatgtctgcaagtcggtcaagaacagaaacacacatatctgcctctggaggtatgtaacatcgtggccggccagcggtgcatcaaaaagttgactgacaatcagacttccaccatgatcaaagcaacagcgaggtccgctccagacaggcaggaggaaatcagccggctgatgaagaatgccagttataacctggacccgtacatacaggagtttggcattaaagtgaaggatgatatgacggaggtgacgggacgtgtcttgccagctccaatcttacagtacggaggccggaaccgtgccatcgccacacccaaccagggggtctgggacatgagagggaagcagttttacaacggcattgagatcaaagtatgggccatcgcttgctttgcccctcagaagcagtgcagggaagaagtcctgaaaaacttcacagaccaattgcgtaagatatccaaggatgcagggatgccaatccagggtcagccctgcttctgcaaatatgcacaaggcgcagacagcgtggagcccatgttccggcaccttaagaacacttactcaggactccagctcatcatcgtcatcctgccagggaaaacaccggtgtatgccgaggtgaagcgagtgggagacacgctccttgggatggccactcagtgcgtgcaagtgaagaacgtggtgaagacgtcgccgcagaccctgtccaacctctgcctcaagatcaacgtcaagctgggagggatcaacaacatcttggtgccccaccaacgttctgcagtctttcaacagccagttatatttctgggggctgatgtaactcatccgccggcaggagatggaaagaagccctcgataacagccgtggtgggaagcatggacgcccacccgagccgttactgcgcgacggtgcgggtccagcgcccccggcaagagatcatcgaggacctttcgtacatggtcagggaactcctcatccagttctacaagtccacccgcttcaagcccacccgcatcatcttctaccgcgacggagtgccagaaggacagctccctcagatccttcactatgagcttctggccatccgcgatgcctgcatcaaactggagaaggactaccagccaggcatcacctacatcgttgtacagaagcgtcatcacacccgccttttctgtgctgacaagaacgaaaggattggcaaaagtgggaacatccctgcaggaacaactgtggacacaaacatcactcatccctttgagtttgatttctacctgtgcagtcacgctggcattcagggtacgagcagaccatctcattactacgttctgtgggacgacaaccggtttacagcagatgagctccaaatcctcacctaccagctttgccacacatacgtccgctgcacccgctccgtctctatcccagcaccagcatattatgcccgcttggtggcctttcgggcacgatatcaccttgtagacaaagagcatgacagcggagaaggcagtcacatatctggccaaagcaacggccgagaccctcaggcccttgccaaggccgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagccgaaattttttacctcactccagaaagctttcagatttgtaggagccatacagaatattttaaaggaagcattgggagcaccttggggcatcccacgagaaatcactgcagggcgccaacagcgttggaggcaggaaaccagcaccctccggggcaaatgcaagagagccgctcgctcgctcgctcgaccggacggacacaccttcttcagtatcgcaagagagactgtctttgtttttcgggcgttccgattccctgaccaaacacggccgcagaagggatccgacttccgattccaaacggaacaggttttggggtgggggaccgaggggtggggggagggagggtggaaacgcaatagtagacgctgggctgtggaacgcttgggtcctccgatgccaaatcaaatgctggtcaggttttgtttccttattatttggggcgggcgggtgggattatggggcaaagggacttgtagagccttaaaacagatgactagatttataaaaactaatattttaggatacaaaatactttaattggtgaagagagaaaaaaaagaaaagaaaccagtagtgtatagatgaattttaacactgtttactcctccccgttaaagaaaaataataattttttcccctttatatatataataataataacgcaaggcacccccagcacttaccacgaagctgagaaggataatttgtcttccatctgttttgaaagtgggttagctgctgcccttttgatgcaacggtggcatacttatacttaactgtgggcgagtgccttaccgcaatgctgcaaaaaccttgacatccattgacaaagcaagccatctccatggtggcctcgatctcccatcttgaaggtgtcaggaggcctttggaaggctcacaaagcttaccgcttcatattcgctcacagcctcatgatgggttaaaattctgtgcacttttagcatgacattagacatgggagagctgctgatatcacctgaagttggtttttttcgttattgcttcccctttttaattttttacacttctgacaaaatggagtacgtcagagagcgaacgtttgcctgccatgtaagcacaaaaaagagaactccattatcaatagatgtcctgatttttttgtatctactgatgattttttttattatcaagtgttatttttgtacaatgaccaggtttattgccaaaacctctcaaatcatactcgtcgtatttcctttattgtgtctccctgctgtcccgagcttgcctttggcctgtttgtaaagcacacgaggtacatttttggtgcttttttgggtgacgcatagacaaacgttggaatgaaataaatgtttttgctatgatgattagttggcttgtccaggaatcacagagcagtccatcgaattcttattatatgtcatagagtattagtttaccaactcacagattggcatcttcatattctttggtcctttttgttctacatacggatatagcataatatctgatcttggaattgtccctttatactctgcttcacaaacccagcagcttcattcttagatcggaatatgaaaatgcactttgcaatgatatagaaatcacgtttgattttgtgttgacaaaataattcttctgtgacagtgattttcaagctctctcttgagcagtaggcatctcagtttggacaaaaagaaggggttattcgtctcataacaggaaagttatttctgctttagtacaaaagcagacgttgcaagaggagaaaacgccatgtgtactcagaccacatgcatttttttcagagttttgtcttaaagagacttcgaaaagatcaaatgggagaaaagatacttgaactttgtttgcattttgggtagtcgtaaccccttttttgtaagcacatcttccgaaaggaaatgccgagcagctcttgtaactcccaggatcaagtgaaagaccttcttttctataaatccttacctctcgtgttgacacgtcctcccaaatgccactttgagacagaatgttaacccatcacaatgctatgcaaagaaaaatggccaaactctgaatagtctttgacacggcctgggcattatgtttcttttcaaccaagatccaaaacaggcaccaatagcttgcgcacagctggtaggattcctggctcggagcctctgagtcccatttcaaattccaaaagacttttaagggttcctctacagcacttgaaggggagggaggcatggttgcatttgcctgttttgtcaagcacaggtccaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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