2024-05-05 00:29:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007994799 2392 bp mRNA linear PRI 01-DEC-2020 DEFINITION PREDICTED: Chlorocebus sabaeus retina and anterior neural fold homeobox 2 (RAX2), mRNA. ACCESSION XM_007994799 VERSION XM_007994799.2 DBLINK BioProject: PRJNA680339 KEYWORDS RefSeq. SOURCE Chlorocebus sabaeus (Cercopithecus sabaeus) ORGANISM Chlorocebus sabaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023666081.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 1, 2020 this sequence version replaced XM_007994799.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chlorocebus sabaeus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2392 /organism="Chlorocebus sabaeus" /mol_type="mRNA" /strain="WHO RCB 10-87" /db_xref="taxon:60711" /chromosome="Unknown" /sex="female" /tissue_type="kidney epithelium" gene 1..2392 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 6 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:103233693" CDS 179..871 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2" /protein_id="XP_007992990.1" /db_xref="GeneID:103233693" /translation="
MLAPVEGTDLPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSHQVGAMFLSPGEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFTDGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(398..412,416..418,467..469,485..487,524..526, 530..535,542..547,551..559,563..568) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(404..406,413..415,533..535,542..547,554..556) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 407..565 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
tgccttccttgggggggcatccttgacccccccccccccgccacacacacaggccgtgacagccacagagaggggaagagaaaacagggaccgtgacacacagagaaggaagaacagacagaggcccagcaggagacccccacaagcccgaggaggacagcccggggatgcagagcgcatgctggccccagtggagggaacagatctccccggagccgggaggcaagcctggggctcccctgccctgtccctgccggtagcccccccggccgtctccccgccatctgtcccgctgccgtctcaccaggtgggagccatgttcctgagcccgggcgagggaccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagttggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcccgaggccccagcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccgggcccggggctgcaagcgtccttcgggcctcatgcctttgctcccaccttcacagatggcttcgccctggaggaggcgtccctgaggctgctggccaaggaacacgcacaggctctggacagggcctggccgccggcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaagtcacggagcaaccgtggtcaggccaggccaccaccactggggagcgggaccagagataggctgctgggtcccccacccccatcctgtcccccaccccatcgccacccatcctgctggcagcggaccggcccccagtgtcaggcaggaggtgacccaagtattcctaggccggggacggggaccctcctcccctcctggggcctcagtctcccgtgtgttaatggggcatgggggcctctgaggttcccgggctgtgaggctgtgagtggcggggccgctgactgtgtaagatgagtgtacatctctctgccactcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacaataatggcaactcccgcgagcctggtctcctttcacggtacacccaccacgtgagcgctcccctctctgttgcgccctggaccttgggcacagccgtcagcccattctacagagagggaaacgggggctcaggcaggaagccaggtccccaaggtcgcacggctaggagtgggtgaagctgcctttcaggcccatcacggcccccccatctgaggcatggcagcggttctggagggagggtggaaccttgtgtggaggcgggctggtgctggctgtgtcgtcgtcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcccccagcccccgtgcatgtcccccagccctgcagaggcacggccggcatctgctctgtccaacccagttgcattgcccaagagctctgagcaaggaggctgtctcggggccgagaacccgctgtgactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggagagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcctgggctccccagatcactcccaggtcaccggggcaccccacctccaggcggcacctcacaagtcctgtggcccaacgcccagccactgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaaggttttttttttctttttaacctaaaccaggccaggtgtggtggctcatgtctgtactcccagtgctttgggatgctgaggtgggaggattgcttgagaccagcctgggtgacatagcaagacccagtctccacagacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagcaacccgagaagctgaggcaggaggatggcttgagcccagaaggtcgaggctgcagggagctgtgatcgcaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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