2024-03-29 06:57:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006799360 3834 bp mRNA linear VRT 24-AUG-2020 DEFINITION PREDICTED: Neolamprologus brichardi NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_006799360 VERSION XM_006799360.1 DBLINK BioProject: PRJNA232513 KEYWORDS RefSeq. SOURCE Neolamprologus brichardi ORGANISM Neolamprologus brichardi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006272064.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neolamprologus brichardi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3834 /organism="Neolamprologus brichardi" /mol_type="mRNA" /isolate="N.brichardi 1_Salsburger" /db_xref="taxon:32507" /chromosome="Unknown" /sex="female" gene 1..3834 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102778912" CDS 25..3585 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_006799423.1" /db_xref="GeneID:102778912" /translation="
MALFPAFAEEASNKVRDSSTEFDWLKNKSFQTGDALSLHGRFLEKTSEEQTKKEPSVSRDVSSEEDGEDGVAPRKKKRKKKQKKKHKKKSGRYSHSSASDSETIYPSDLKKEQEAKRQEAPQLASHFSWLDDLQLPTEQLFCVDRKADPANWTYKSLYRGDVARYRRKGSSALGLDFHKQGVSWEDSEATNKKKKKGGDGKKAADRYYSTVSRQLLKAAPALPALLASSDGSDGTSSAIFLPLCDDEADNKEGEKAHTGQTSSVNPLGVYDSLTALWLQGKGQQDQRKEDAHTEEGTALLGGRTEDFNRRLREQPADTQLWIEFIRYQDEVSAAVFKGEEEQQGSDAAERRKSSYRAVLEKKLSIAERAVATNPLCIALQLERLRICQELWEPSALAKEWKKLVFLHPNSTPLWREYLLFTQSYFSSFTVSKVNAAYCKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQCHFLRQCGHSEKSTALFQAMMDFTFFKPDSVRELSTKQQVEFFEPFWDSGEARVGELGARGWKAWMLQQERGGWLQPTAEEEEEEEEDEEEVKDRTQPRGTIWLDVESSREATDWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELHLRLLLRFLSFLGLPVDSVLSVSPGQPGLLLENLSLLTQGNAPQRPLTSYDLADGGINSVGHMTTLQGTRKWVGLGKQGEKFLTNLFNMLQPVLPPHHRAFLSLSWIRYEKLKVMRCLHGGNKKRLRSQGKSSKRVAKRLLKEPDNRSSLVLWREYGHLEWLLGNLDEARKVFSTATALGGTKGLSSLALCDLCLLWSQLELEDGAKERGGQPADVTASPAVSVLTRLAEGTSASSTSSSLSTVSILKARKSYEQALAASLSALDQNRKVQDDLMAEKLRLRGLVGCYALFQYLTVSVQAANAVYTQVREKMEELHRTLTAEQQLNSSKEGKLARADADSNRPCVSRVAAECEALAWQQAALLKYHNSVAVFPLVTLRQTLTSALPVWTTSVPLWSIYVQVENRYHSAGRARRFFHSVTRNCSSVVPRLFAIVAEQQRKQLVDAAQRSCLHDDPLSILPENGLSNRIRGLFENAIATETGAHCPLLWRMYIYFLVCEGKVDKATGIFYKALQNIPWCKGLYMDAVQLFPDHLQEFVDLLTEKELRVRLPLEELDILLED"
misc_feature 445..759 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(445..468,475..480,490..495,499..501,505..549, 556..564,568..576,595..597,619..624,634..639,643..648, 655..675,700..711,730..759) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 943..1902 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cctgtttctaagtgacgcagcatcatggcgctgtttccagcgtttgcagaagaggcgagcaacaaagttagagattcttccacagagtttgattggctgaagaataagagttttcagacaggagatgcactctctcttcacggtcgatttctagagaagaccagcgaggagcaaaccaagaaggaaccaagtgttagcagagatgtcagctctgaagaggacggagaggatggtgtggcacccagaaagaagaaaaggaagaagaaacagaagaaaaagcacaaaaaaaagagcgggaggtattcgcacagcagcgcatctgactctgaaaccatctacccgagtgatctcaaaaaggagcaagaagccaaaaggcaggaggctcctcagttagcgagccatttctcttggttggatgacctccagttgcccacagagcagctgttttgcgtggaccgaaaagcagaccccgccaactggacttacaagtctctgtacagaggagacgtagccaggtatagaaggaaaggcagctcggctctgggtttggactttcacaagcagggggtcagctgggaggactcagaggcgactaataagaagaagaagaaaggcggcgacgggaagaaggcagcggacagatactactctacagtcagtcgacagctgctgaaggcagcgcctgctcttcctgcattactagcgagttctgatggtagcgatggcaccagttctgcaatcttcctccctctgtgtgatgatgaggcagacaataaagaaggagagaaagctcacacagggcagacgtcttcggtgaatcccctcggtgtgtatgactccttgacggccctctggctgcaggggaaaggacagcaagaccagcgaaaggaggacgctcacacagaggagggcactgcacttttgggtggcaggaccgaagatttcaacaggcggctgagagagcagccagcagacacacagctgtggatagagttcatacgatatcaggatgaggtgagtgcagctgtgtttaaaggcgaggaggagcagcagggcagtgatgctgctgagcgccgcaagtcttcctacagggcagtgctggagaaaaagctaagcattgcagagcgcgccgtggccaccaaccccctctgcatagctctgcaactcgagagactccgcatctgccaggagctctgggagccctcagctctggctaaagagtggaagaaactggtgtttctccacccaaacagcacccccctgtggagggagtatctgctcttcacccagagctatttcagcagcttcactgtgtccaaggtcaacgctgcgtactgcaagtgtctgagcacgctcagtgctgtccgagacggcagcatggtgtctcacccggctctgccaggaatagaggaggatatgttggatatcttcacgcagcagtgtcactttctgcgtcagtgtggtcattcggagaagtcgactgccctgtttcaggcaatgatggactttactttcttcaagcctgacagcgtgcgagagctgtccactaagcagcaggtcgagttctttgagccgttctgggacagcggcgaagcaagggtcggggagctgggcgccagaggctggaaagcttggatgctccaacaagagcgaggaggttggctacaacccactgcagaagaggaggaagaagaggaagaggatgaagaggaggtgaaggacaggacccagcccagaggtaccatctggctggatgtggagtcatctcgtgaagccacagactggttgccctggagacccgacaaagccaagggccagtcagaggaggactgtgaggatcctgacagacaggtgttgtttgatgacatcggcccgtcactgatttgtttgtcttcgccagagctccatctccgcctgcttctccgtttcttgagctttttgggtttgcctgtggactcagtgctctcggtttccccaggtcagcctggcttgctgctggagaacctttctctgctcactcaaggtaatgctccccagcgtcctctgacctcctatgatttagctgatggtggcattaactctgtcggtcacatgaccactctccaaggaacacggaagtgggtggggcttgggaaacagggtgagaagttcctcacgaacttgttcaatatgcttcagcctgtgcttccgccccaccaccgagccttcctgtcactcagctggatccggtacgagaaactcaaggtcatgcgctgcttgcacggcggaaataaaaagcgccttcgttctcaggggaagagcagcaagcgagttgccaagcggctgctcaaagaaccagacaatcgctcatcattagtgttgtggcgggagtacggccacctggaatggctgctgggcaacctggacgaggcccgcaaagtgttctccactgcgacggcgcttgggggaaccaaagggctgagcagtctcgctctgtgtgatctctgcctgctgtggtcccagctggagttggaggatggagcgaaagagcgagggggtcaaccggctgatgtcacagcatccccggctgtgtctgtactgacccggctagcagaaggaacctctgcatcgtccacttcatcctccctctccacggtttccatcctgaaagccagaaaatcgtacgaacaggctctggctgccagtttatcagcactggaccaaaacaggaaagtccaagacgacctgatggcagagaagctgaggttgagaggtctggttggctgctacgctcttttccagtacctcacggtgagcgtgcaagcagccaacgcagtctacacccaggttagagagaagatggaggaactacaccgcacgttaacagctgaacagcagctgaacagcagcaaggagggtaagcttgcaagagctgacgctgactcaaacaggccctgtgtcagcagggtagctgctgagtgtgaggcgctggcctggcagcaggcggcactgctcaagtaccacaacagcgtcgctgtgtttcctctggtgacgctgaggcaaacgctgacatcggccctcccagtctggaccaccagcgtccctctctggagcatttatgtacaggtggagaaccgttaccatagcgctggccgtgcacgccggttttttcactctgtaaccagaaactgcagcagcgtggtgccgcgtctctttgccattgttgctgaacagcaaaggaagcagctggtagatgcagctcagagatcgtgtttacatgatgatcccttatccatcctgccggagaatggcctcagcaaccgcatccgtggactgtttgaaaacgccatagcaacagaaactggggctcattgtcctttactttggagaatgtacatctacttcctggtgtgtgaaggaaaagtggataaagccacaggaatcttctacaaggccttacagaatattccctggtgtaagggtttgtatatggacgcagtgcagctgttccccgatcacctgcaggagtttgtagacctgttgacagagaaagaactgcgagtgcgactgcctttagaagaattggacatactgctggaagactgagcacacacacaattttaattcaagtgtgtgttcaaatattcaaatttgatgggaagaaaaggacaagcacaaaggcaaactcgacacatatacagctgcagtaatttgagcaaagagctgggttttgtttgtttgtttttttgtataaagtgacacaaaatgtcacaacaaaccattaaaactgtattcctttttacttgatattgtcaataaatacaagattgatctatgtgacatgccttaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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