2024-04-24 19:47:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006791851 11415 bp mRNA linear VRT 24-AUG-2020 DEFINITION PREDICTED: Neolamprologus brichardi protein argonaute-3 (LOC102778312), mRNA. ACCESSION XM_006791851 VERSION XM_006791851.2 DBLINK BioProject: PRJNA232513 KEYWORDS RefSeq; includes ab initio. SOURCE Neolamprologus brichardi ORGANISM Neolamprologus brichardi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006272022.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 24, 2020 this sequence version replaced XM_006791851.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neolamprologus brichardi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..11415 /organism="Neolamprologus brichardi" /mol_type="mRNA" /isolate="N.brichardi 1_Salsburger" /db_xref="taxon:32507" /chromosome="Unknown" /sex="female" gene 1..11415 /gene="LOC102778312" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102778312" CDS 788..3205 /gene="LOC102778312" /codon_start=1 /product="protein argonaute-3" /protein_id="XP_006791914.1" /db_xref="GeneID:102778312" /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRNLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQVCPTSSPSHMLPAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 1004..1288 /gene="LOC102778312" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1316..1468 /gene="LOC102778312" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1469..1831 /gene="LOC102778312" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1625..1627,1670..1672,1712..1714,1724..1726, 1778..1780,1799..1801,1805..1807) /gene="LOC102778312" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1964..3088 /gene="LOC102778312" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2375..2377,2387..2389,2423..2434,2441..2443, 2465..2467,2474..2476,2486..2488,2498..2500) /gene="LOC102778312" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
ttcctgtcggtgtcagaaaggcaacttcaccatatttagctggcttgccgaagccttgcagagttgatctgtcaaccagactggagatcgtgacacttatcggcgcatacatcgcgctgttgacagctttacttttggcagctgaacgcatactacggaggacgacgtcgtgggtgtacggccctcgggagaagggcccgtatcagcagctgtttttaacgcaggaaaagtagccgtcgtctgacagaattccaactctccgacagcctagctagtcagctagctaattagggttgctttcccgacgttagctttgctgtagatacgaatttatgacgtctcttttaatgatcaggtatcggtagggattcatttggactccgtgaccccgctgtgatgatatcctgacagctcctcaaaccactgtcccccccccccactcgagcctggctagtgagttaacttggctaactagcaggttttcactgccacagcgccgcgttgagcagccagcagctttcgccgtggcagtgaaatccgattggatacgttgaccgagtgcaaacggcggtttgtggagactccgaagaccctcggccggccaagtgaccgtgccggaggccccccctcctcctcctttgacaggacacagagagaccaggaccctcggccactcagcgctgcagaggcggtgcacagccgaaggagacaccggattgaacggaggaagagtcccaaacgtttgacaactgtgatccgggaagtgaaccgggcattgacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatggggaagccaatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctctacgaggtggacatcaagcctgacaagtgcccacggcgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccagtctacgatggaaagaagagtttgtacacagccaacccactgcctgtggcacctacgggggtggacctggatgtcactctcccaggagagggagggaaagatcggcccttcaaagtttccattaagttcgtgtctctggtcagctggcacatgctccacgaggtgctgactggccgcagcatgcctgaaccccttgagctggacaagcctatcagcaccaaccctgtacacgcagtggacgtagtactgcgaaacttgccctccatgaagtacactccagtgggccgatccttcttctctgctccagaaggctacgaccatcctctgggaggtgggagggaagtttggtttggtttccaccaatctgtgcgccctgccatgtggaagatgatgctaaacattgacgtgtctgccacagccttctacaaagcccagccagtgatccagttcatgtgtgaagtgctggatatccacaacatcgacgagcagcctcggcccctcacagactcgcacagggtcaaattcaccaaagaaatcaaaggtttaaaggtggaggtgacgcactgtggaaccatgcggaggaagtaccgcgtctgcaacgtgacgcgtcgacctgccagccatcaaacgttccctctgcagctggagaatggccagaccgtagagcgtactgtagcccagtacttcagggagaagtacaacctgcagctcaaatatccacatttaccctgtctacaggtgggccaggagcaaaagcacacctacctgcccctagaggtgtgtaatattgtagctggtcaacggtgcatcaagaagctgacagataatcagacctccactatgatcaaagccacagctcgctctgcacctgacagacaggaggagatcagcaggctggtgcgcagtgccaactatgaggcagacccttttgtgcaggagttccagttcaaagtgcgtgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcaggaaccgcactgtagccacgcccagccacggcgtgtgggacatgaggggaaagcagttccacaccggggtagagatcaagatgtgggccattgcctgcttcgccacacagaggcagtgtcgagaagaaatcctcaagggtttcacagaccagctgcgtaaaatctcaaaggatgctgggatgcccatccaaggccagccgtgtttctgtaaatacgcccagggagcagacagcgtggagcccatgttcagacacctgaagaacacctatgccggactgcagctcataatcgtcatcctgccgggaaaaactcctgtctacgcggaggtaaagcgtgtgggagacactctgttgggcatggcgactcagtgtgttcaggttaagaacgtggtgaagacgtcaccgcagactctgtccaacctctgcctcaagatcaatgtgaagctgggagggatcaacaacatcctggtacctcaccaacgaccatcagtgtttcaacagccagttatcttcttgggagcagatgttacacatccaccagccggagatgggaagaagccttctattgcagcagtggtaggtagtatggacgcccaccccagcaggtactgtgccaccgtacgagtccagaggcccaggcaggaggtcatccaggacctggcctctatggtgcgggaactgctgatccagttctacaagtcaacccgctacaagcccacacggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgtgaggcctgcatcagcctggagaaggagtaccagccaggcatcacctacattgttgtgcaaaaacgccaccatacacgcctcttctgtgccgaccgcaacgagagagttggacgtagtggaaacattcccgctggtactactgtggatacggacatcacgcatccctacgagttcgatttttacctctgcagtcacgctggaatacaggtctgtccaacctcttctccatctcatatgttgcccgctgagggcagccatgtgtctggtcagagtaacggtcgggacccccaggcgctggccaaagctgttcagatccaccacgacaccctgaggaccatgtacttcgcctgagctacacaaactctccccaaccattgccactcttaacacacacacacacaaccatgcacacctggcatgccagtcaaggaatcctcataggtgcaagtcccagcccccccccaacatgcctaatcaaaaacggacctgacactgtgcagaggaaagcagggaggagggaggggaagaggcacccccacactggactgaggatgcaaaagctgctttaaaaaacaaacaaacaagagagaatctcagcactattatgcaatattaaaccagccaactagtttattttcacccttattaggcaccctctcccctccggttttcactacccctcctatgtgttcgtcccctgttttgtctcctttacttgtggcctagtttgtggctgttcttttccttttctttggcatagtctttgataaatctgcttctttgccttcttcagtacctcaagtcagtttgagcagcagcacttttacattctgtcagtttttgtgtaatttgtttttgatttttctcctatttctttttcttaagtttaggggcagagagagagaaaaaaaaggactcagactctggagttagtaagaggtgtctgatgtagtttgaagcatcaattcattgaccagaggtcctcccagtttgatcttttatttttcctctcgtttcctttcttgttctgtcacttttcattagtgtgtgggcacgataccaccagttgcttgtacagagctacatgttcttttgagcacactgccacttattggcaaagacggatattgccccttaagtcacaaagaggagcagtttcggtggtctcagatcagtttcggatttattcctgaaggttagctgtcacatttaaacggagggcagtttatattatatatcaatttgctgagttgcagccatccatggattgtatttaaagtattattgacactgttatttgagtctggttgctatatttcttctacattatgtgaaacattttaagaatctgattcttaaagaaaaaagaagatttaatcgtgttagcttttgtttttaaatcgccctgcattcatttctctcagtgctttatcttgcctttccccccttgtatctaagacggtggctaaatacagacgatgtcgatggtttcctcttgtgcaataatcagtcgaacgaagggaagaggatttttaggggacttaagcgactcaaaagtacagttttcacatttcatatgaaagcgagtgtccttgaaaggagagaagtttgccacttgcaaggcactttcatgtgtcgctcctccgtgagcagaatgacctgcatgttgtatgagtttgctctcgctgttgggcaaaaagaaaggagaaaaaaaaatatggtgcaactgcagttttggtgatttttcgtgtttttacttgaactgaaggactttgtgcgtctccgtggtttgaggatactttcggatcagtgggcatgattttagaattcctgatcgtcagcttgctaatgagattgatttttcttaattcctaagaattacaaagcttttcacttgacagcagcaaagtggagtataaaggccataaagaggtagtattcaagtgcctgttggaagttaagtgtgtaatcgtcagaagctgtatgagttgtttcagtggggtacaatgatcaaagagcgtacaccaaccagacagcgtgaagcaagaaagtttcacccgatgcctcttattcttctcaataaccgtctactgacttttctatacatctcattcgaattaacctaagatcaatatatttattgtat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caagtagtagagtgtaaaataagtttaaaaaaaatgcggggggggaaagaaggaagggtgttggaaaggcaaaattcattgaattacagtgaaatgttttagcaaaggcgttgcttctttcctctttaaatgtctcctgttttgttttgttttgtttttccttgtgccagaatattttacagcaggaccaggtctcattccacaggaaaacacatgcctcagccttaagtgcgtccttacgtaatagaaatctgtgtgacttttgcaatgcctgtgctgtgtcgggtggcctaccaagaaaactagcctacgtacttgatctgccctgatatctccaactggcatactcatctgttctcgcatgtaaaccactaacattgctacacaacgtagagcgctctgatgaatgaacactgctctgtttaatatgtactgatgtcagaacgggagccaggtctgggtcaaactgcctttggaaacccttttcagtatttggtgttacctgttgagcggtgcctacagcccgagggcagtttggatatgtacgtatgctcattagattttatgcacttgcctgtattttgtaagctcgttgctcggttgacacagtcattgtcgctgattgcaaatccaaagaaggatccaaagaacagtttgacgcaggccttacacgagaaccaggcggtttccccactgtgccggattacagagacctgtgcctgtacaatgaaccaaggatgaattgtgttgtgatgatttttttttttctttttttcttttaattatctgttggttgtccctcacctcatcggaggatcagagacattgaccttttgagtgttgtcaatcttccaaagcaagaaaagccctctgtccttttaaaccgaatggcttttggtttattcaatgtttaccgtaatgtttactcccatggctatctgatgttgaacctgttttcattacattagcattccaaaatgacttcaaaccaaaaaccgctgaagagattaggctcctgacgccgtttaccttgtatacacttaatggttttgaagacagattattcgagagtggccaaggatatcaaacattttgggtactctgattgttccgatgcatcgtcactcttgtgtcagtcttatttcaaactaaagatcttgagctctgatacctctgagtgaggcaccagcaaactgacgtgtacgttgaaccttcaccaccagatcatccatgtctcagcctctgtattttttgcaaaaggctgtgttgtaccaacggctgtattcctttcagttttaattgtctttcttttgttactctttctctcttataggttgttggcctttttagtgttgctttgcttcagtttgaagtgtatctttgactaatacttgcaataaaaatgctttgcttta
//
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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