2024-04-19 20:56:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006754720 3904 bp mRNA linear MAM 09-FEB-2016 DEFINITION PREDICTED: Myotis davidii NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_006754720 VERSION XM_006754720.2 DBLINK BioProject: PRJNA232515 KEYWORDS RefSeq. SOURCE Myotis davidii ORGANISM Myotis davidii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006284349.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2016 this sequence version replaced XM_006754720.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis davidii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3904 /organism="Myotis davidii" /mol_type="mRNA" /db_xref="taxon:225400" /chromosome="Unknown" /sex="male" /tissue_type="spleen, kidney and small intestine" /country="China: Taiyi Cave, Xianning, Wuhan, Hubei Province" /collection_date="21-Aug-2011" gene 1..3904 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:102755227" CDS 145..3645 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X1" /protein_id="XP_006754783.1" /db_xref="GeneID:102755227" /translation="
MALFPAFAGVSEAPDSGSARKELDWLSNPSFCVETVTTLSQQAEEAAALVSEGSPLTRSPLKSELSDESDSNRNLRQASRKKKKEKKKKRKHQHHKKTKRKRGQSSSSGSELDTDSEKDKSPRGLRGGNRGPETLSQEKNAAAAAAGPRCVWLEDIQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGAPTGKKRAHKHVERYFTKKNVGLMKADGVAVSRQTDPPSSAPLSFIPVKDSDDVAPPVTTWLNPLGIYDQSTTQWLQGQGPSEQESKQPDSQPDREDALLKARVEEFNRRVRENPRDTELWMAFVAFQDEVMRSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIDSNPGSVDLKLAKLKLCTELWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHAEKAVSLFQAMVDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDDDDDEPEEDDQDIRDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQALQFQLIVAFLQFLGVPAGFSPPAACLYLAMDENSIFDNGLYDEQPLTFLNLSFSGVSCVGRTDQLGCRRWTRGHSREGEEFIRNIFHLVMPLFSGRERSQLCSSWLRYEIAKVIWCLHTKNKKRLKSRGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALSTAGSRELKDPEVCELSLLYAELELELAPDTRVATAARAVHILTRLAESSPYGPYTGQVLAIHILKARKAYEHALQDCLCEDRVSDPAATASLSRLVSVVKCFMLFQYLTIGIDAAVQIYEQVFAKLKGSLSPEGPGLEASACPPSVSSVLEAVTLMYTSLLRFHMKVSVYPLAPLRQALSEALRLYPGNQVLWRSYVQLQSKSHSASKTRRFFGAITRSAAPLEPWLFAIEAEKMRKRLVKTVQRVDGREVYATIPETGLTHRIRALFENAIRSEHGSQCPLLWRMYLSFLVSLGNKDRSKGVFYKALQSCPWAKALYMDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 631..921 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(631..657,664..669,679..684,688..690,694..738, 745..753,757..765,787..795,805..810,814..819,826..846, 871..882,892..921) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1087..2085 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gccccgccccttcccgccccgcctgagtgagcgccaggaaaaccacacttcccagagtgcaccgcgaccacgatggcctcactaccggcgtccgctcgccgggcgccatttatgtagccgggaacggcggtgcggcctgcgaccatggcgctgttcccggcctttgcgggcgttagtgaggctcccgatagcgggagcgccaggaaagaattagattggctgagcaacccaagcttttgtgttgaaaccgtcacaacgctgagccaacaagctgaagaggccgcagctcttgtttctgaagggtcaccactgacgaggagtcctctgaaatcagagctatcagatgaaagtgactcgaacagaaacctcagacaagcaagcaggaaaaagaagaaggagaaaaagaagaagaggaagcatcagcaccacaagaaaaccaagagaaaacgcgggcagtccagtagcagtgggtccgagctggacactgactctgaaaaggacaaatcccccagaggcctcagaggcggcaacagaggaccggagacactgagccaagaaaagaatgctgctgctgctgctgctgggccccgctgtgtgtggcttgaggatatccaggctctgacaggagaaaccttcagaacagataagaaaccagaccctgcaaactgggagtataagtctctctaccgaggagatatagccagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggctcccacgggaaagaagcgtgcgcacaagcacgttgagcgctatttcacgaagaagaacgtggggctgatgaaggccgacggagtcgccgtgagccgtcagactgaccctccctcgtctgcgcccctctccttcatcccagtgaaggactcggacgatgtggctcctccggttacaacctggctgaaccctctggggatttatgatcagtccaccacccagtggttacagggacaaggtccttcggagcaggaatccaagcagccagactcccagccggaccgtgaggacgcgcttctcaaggccagggtggaggagttcaaccggagggtgcgggagaacccacgggatactgagctgtggatggcgttcgtcgcttttcaggacgaggtcatgaggagccctggcctgtatgccatcgaggaaggcgagcaggagaagcggaagcggtccctgaagctcatcctggagaagaagctggccattctggagcgggccatcgacagcaacccgggcagcgtggacctgaagctcgccaagctgaagctctgcacggagctctgggagccctccacgctggtcaaagagtggcagaagctgatattcctacaccccaacaatacagccctttggcagaaataccttctgttttgccagagccagttcagcaccttttcaatatcaaaaattcacagcctttatgggaaatgcttgagcacattgtctgctgtgaaggacggcagcatcttgtctcaccctgagctgcccggcaccgaggaggccatgtttgcgctctttctccagcagtgccacttcctgcgccaggccgggcacgcggagaaggccgtctccttgttccaggccatggtcgacttcaccttcttcaaacccgacagcgtgaaagatctgcccaccagagggcaggtggagttctttgagcccttttgggacagcggagagccccgggccggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgatgatgatgatgaaccagaagaggatgaccaggacatcagagataagaccctgcccaggtggcagatctggcttgccgctgagcggtcccgagaccagaggcactggcggccgtggcggcctgataagaccaagaagcaaacggaggaagactgtgaggatccagagagacaggtgctgtttgatgatattggacaatctctaatccgactttccagccaagctcttcagttccagctgattgtggcctttctgcagttcctgggtgtgcctgctggcttcagccctccagccgcctgcctctacctggccatggatgagaacagcatcttcgataacgggctttatgacgaacagccattgacttttctcaacctttcattttctggcgtcagctgtgttggtcgcacggaccagttgggctgccggcgctggaccaggggccacagccgagagggcgaggagttcatccgcaacatcttccacctggtgatgcctttgttttccggcagggagaggtcccagctctgctcctcctggctacggtacgagatcgcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaaatcacgaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaatttttgcctctggaagcagtatgcacatctggaatggttgcttggcaacacagaggacgccagaaaagtcttcgatacagcgctcagcacggcagggagcagggagctgaaggaccctgaggtctgtgagctcagtctgctctatgctgagctggagctggagctggcaccagacaccagagtggccaccgcggcccgagctgttcacatattaaccaggctggctgagagcagtccctatgggccctacactgggcaagtcctggccattcacattttgaaagctcggaaggcttacgaacacgcactgcaggactgtctgtgtgaggaccgcgtctccgatccagctgccaccgcctccctgagccgcctagttagtgtggtgaaatgctttatgctcttccagtatttgaccatagggatcgatgccgccgtgcagatatacgagcaggtatttgcaaaactgaagggctctctttcccccgagggcccaggcctggaggccagtgcctgccccccaagtgtgagcagcgtcctcgaggccgtcacactgatgtacacgagcctgctcaggttccacatgaaagtcagcgtgtaccctctggctcctctgcggcaggcgctctcagaggctttgaggttgtatccgggcaaccaggttctttggaggtcctacgttcagcttcagagcaagtcccacagcgccagcaagaccaggaggttcttcggtgccatcaccaggtctgcggcacccttggagccttggctgtttgccattgaagctgagaaaatgaggaaacgactggtgaagaccgtccagagggtagatggcagggaggtctacgccacaattcctgagaccggcttgacgcaccggatcagagccctgtttgaaaatgcgatccggagtgagcacggcagccagtgccccttactgtggaggatgtacttgagttttttggtttcattaggaaataaggacagaagcaagggtgtgttctacaaagcgcttcagagttgtccttgggcaaaggcgctgtacatggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgaccgagaaggagctgcgagtgcgcctgcccctcgaggagctggagctgttgctggaggactagcgaccggggatgggccacacctcagggcatgtccctgccctgggagctgggggagcacgaggtgggatcaggtgtgcgagcatgcatgccagcagacccgtttttaaagttttttagataatttgtgtctgggttgtgtctcatctcttgcacatttttttggatgtgccagtgacacagaagcactcgttttacatattatagatgcgcatcttgtgtttacatgtacatagacaagaacagggcagtggtaaccaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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