2024-04-25 03:25:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006748057 3847 bp mRNA linear MAM 30-SEP-2019 DEFINITION PREDICTED: Leptonychotes weddellii NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_006748057 VERSION XM_006748057.2 DBLINK BioProject: PRJNA232772 KEYWORDS RefSeq. SOURCE Leptonychotes weddellii (Weddell seal) ORGANISM Leptonychotes weddellii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006385806.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Sep 30, 2019 this sequence version replaced XM_006748057.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Leptonychotes weddellii Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3847 /organism="Leptonychotes weddellii" /mol_type="mRNA" /isolate="WS11-02" /db_xref="taxon:9713" /chromosome="Unknown" /sex="female" /tissue_type="liver" gene 1..3847 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:102735624" CDS 73..3579 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_006748120.1" /db_xref="GeneID:102735624" /translation="
MALFPAFAGIGDAPNSGSARKELDWLSNPSFCVGAISSLSQQPEEAATLVSEGSPLTRSPLKSEPSDESDANGKPKQTSRKKKKEKKKKRKRHHKKTKRKRGQAGSSGSEPDSEPEEDKTSRSTGDSRRESEKPSQEGNAAADIGHRFVWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWERAAAEKKPSHKRVERYFTKKSVGLMNIDGVAVGSKTEPPSSEPISFIPVKGSDDVVPPVTTWLNPLGIYDPSTTQWLQGQGPPEQESKQPDSQTDRERALLKAKVEEFNRRVRENPHDIQLWMAFVAFQDEVVRSPGLYALEAGEQEKRKRSAKLVLEKQLAVLERAIESNQSSVELQLARLKLCAEFWEPSALLREWQKLIFVHPNSTALWQKYLLFCQSQFSTFTVSKIHGLYGKCLSTLSAVQDGSILSHPALPGTEEAVFALFLQHCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDDDDEPEDEDQEIRDKSLPRWQIWLAAERSRDQRHWQPWRPDKTKKQTEEDCEDPERQVLFDDIAQSLIQLSSRDLQFQLVAAFLQFLGVPSGLSPLASCLYLAMDEDSIFDNGLHDEKPLTFLDLSFSGVSCVGRSDPLGCHRWTRGHNREGEEFIRNIFHLVMSLFSGQERSQLCFSWLRYEMAKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSLAGGGEPRGCEPWELGLLYAGLELELELELSPAARGAATARAVHILTRLTENGPYAPYSGPVSAVHVLKARKAYEHALQDCQGQSCGAGPPPADASHRLAGLLRCFMLFQYLTVGIEAAVRIYEQACAQLQGSVSPGGCGPDEPSCAQSPGRGLEAVTLMHTSLLRFHARVSVCPVAPLRQALSDALRWYPGNQVLWRAYVQLQSKSHTASKTRRFFDAITRSAKPLEPWLFAIEAEKTRKRLVETVQRVDGREVHATIPETGLTHRIEALFENALRSDNGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKTLYLDAVGHFPEEMQEVLDLMTEKELRVRLPVEELELLLED"
misc_feature 553..840 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(553..579,586..591,601..606,610..612,616..660, 667..675,679..687,709..717,727..732,736..741,748..768, 793..804,814..840) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1009..2007 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gcgggcctcactaccggcgtccgctcgccggcgccatttctgtcgaggggaacggcagtgcggcctgtgatcatggcgctgttcccggcctttgccggtattggtgacgctcccaacagcggcagcgccaggaaagaattagattggctgagcaacccgagcttttgtgttggagccataagctctctgagccaacaacctgaagaggctgccactctggtttctgaagggtcaccgctgacgaggagtcctctgaaatcagagccttcagatgaaagtgatgctaacggaaagcccaaacaaacaagcagaaaaaagaagaaagagaagaagaagaagaggaaacgtcaccacaagaaaaccaagagaaaacgtgggcaggccggtagcagtggctccgagccggatagtgagcctgaagaggacaaaacttccagaagcactggagacagtagaagggaatcggagaaaccaagtcaagaaggtaatgctgccgctgatattgggcatcgctttgtttggcttgaggacgttcaggctctgactggagaaaccttcagaacagataagaaaccggatccggccaactgggagtataagtctctctaccgaggagacatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtatatcctgggagagggctgccgcagaaaagaagccttcacacaagcgtgttgagcgctatttcacgaagaagagcgtgggcttaatgaacattgacggagttgccgttggcagtaaaaccgaacctccctcatctgagccgatctcgtttatccccgtgaagggctcggatgatgtggttcctcccgttacgacctggttgaaccctctggggatttacgatccgtccaccacgcagtggttacaaggacagggccctccagagcaagaatcaaagcagccagactcccagacagacagagagcgcgcgctgctcaaggccaaggtggaggagttcaacaggagagtgcgggagaaccctcacgatattcagctgtggatggcgttcgttgcttttcaggacgaggtcgtgcggagccccggcctgtatgccctggaggcaggggagcaggagaagcggaagaggtctgcgaagctggtgctggagaagcagctggctgtcctggagcgggccatcgagagcaaccagagctccgtggagctgcagctggcccggctgaagctgtgcgccgagttctgggagccctcggcgctgctcagggagtggcagaaactgatctttgtacaccccaacagtacggccctctggcagaagtaccttttattttgccaaagccagttcagcaccttcaccgtgtcgaagatccacggtctttacggcaaatgcttgagcactctgtccgcggtgcaggacggcagcatcctgtcgcaccccgccctgcccggcaccgaggaggccgtgttcgctctctttcttcagcactgtcacttcctgcggcaggccggtcactcggagaaggcgatctcgctcttccaggccatggtggacttcaccttcttcaagccagacagcgtgaaagacctgcctaccaaaggacaggtggaattctttgagcccttctgggacagtggggagccccgggctggggagaagggcgcccgaggctggagagcctggatgcaccagcaggagcgaggcggctgggtggtcatcagtccagatgatgatgatgacgagccagaagacgaggaccaggaaataagagataagagtctgcccaggtggcagatctggctcgccgctgagcggtcccgagaccagagacactggcagccgtggcgccctgataagaccaagaagcaaaccgaagaagactgtgaggacccagagagacaggtgctgtttgatgacattgcgcagtctctgatccagctctccagccgggatcttcagtttcagctggtcgcggcctttctgcagttcctgggcgtgccttctggcctcagccccctggcctcctgcctctacctggccatggacgaggacagcatcttcgataacgggcttcacgatgaaaagccattgacttttctcgacctgtccttttccggcgtcagctgtgttggccgttcagacccactgggctgccatcgctggacccgcgggcacaatcgagagggcgaggagttcatccgtaacatctttcaccttgtgatgtctctgttttcaggccaggagaggtctcagctctgcttctcctggctacggtacgagatggcgaaggtcgtttggtgtctgcacactaaaaacaagaagaggttaaagtcacaaggaaagaactgcaaaaaacttgccaaaaacctcctgaaggagccagaaaaccgcaacaacttttgcctctggaagcagtacgcacatctggagtggttgctcggcaacaccgaggacgccaggaaggtgttcgacacggcgctcagcctggcggggggcggagagccgcggggctgcgagccctgggagctcggcctgctctacgcggggctggagctggagctggagctggagctgtcgccggccgcgagaggggccgccacggcccgagctgtccacatactgaccaggctgacggagaatggtccctacgcgccctactccgggccggtctcggctgttcacgttttgaaggcccggaaggcttacgaacacgcgctgcaggactgtcaggggcagagctgtggcgctgggccgcctcccgccgacgcctctcaccgcctcgccggcctgctcaggtgcttcatgctcttccagtacttgaccgtggggatcgaagccgctgtgcggatctacgagcaggcgtgtgcgcagctgcagggctccgtctccccgggcggctgtgggccggacgagcccagctgcgcgcagagcccgggccgcggcctcgaggccgtcacgctgatgcacacgagcctgctgcggttccacgcgagggtcagcgtgtgccccgtggctcctctgcggcaggcgctctcggacgccttacggtggtaccccggcaaccaggttctgtggcgggcctacgtacagcttcagagtaagtcccacacggccagtaagaccagaaggttcttcgatgccattaccaggtctgccaaacccttggagccgtggttgtttgcgattgaagccgagaaaacgaggaagaggctggtggaaaccgttcagagggtggatggcagagaggtccacgccacgattcccgagaccggcttgacgcatcggatcgaagccctgtttgaaaatgctttgcggagcgacaacggcagccagtgccccttactgtggagaatgtatttgaactttctggtctccttgggaaacaaagaaaggagcaaaggcgtgttctacaaagcacttcagaattgtccttgggcaaagacgctgtacctggatgccgtgggccacttccctgaagagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcccgtggaggagttggagcttctactcgaggactagagaccaggaggtgttcaacagtccctgccttccgggcctcgtcgcctgcaccgctggggccgggatgtagcagacggggcacgtgtaggtgcatgtgttccaggagctctgctttccaagtctagctttaattcttagtaatttgaacctgggtcatcagtttcttagctcttgcacattttttggatgtgcaaataacacagaagctattgcttacatattatatatgtgaatgtgtaggtaagaatcatgccccatgacaatggaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]