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2024-03-28 20:28:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005933873            4430 bp    mRNA    linear   VRT 02-JUL-2021
DEFINITION  PREDICTED: Haplochromis burtoni NRDE-2, necessary for RNA
            interference, domain containing (nrde2), mRNA.
ACCESSION   XM_005933873
VERSION     XM_005933873.3
DBLINK      BioProject: PRJNA737037
KEYWORDS    RefSeq.
SOURCE      Haplochromis burtoni (Burton's mouthbrooder)
  ORGANISM  Haplochromis burtoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Haplochromis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024582535.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 2, 2021 this sequence version replaced XM_005933873.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haplochromis burtoni Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4430
                     /organism="Haplochromis burtoni"
                     /mol_type="mRNA"
                     /strain="Fernald_Lab_line"
                     /db_xref="taxon:8153"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
     gene            1..4430
                     /gene="nrde2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 71 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:102292501"
     CDS             47..3607
                     /gene="nrde2"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="XP_005933935.1"
                     /db_xref="GeneID:102292501"
                     /translation="
MALFPAFAEEASNKVRDSSTEFDWLKNKSFQTGDALSLHGRFLEKTSEEQNKKEPSVSRDVSSEEDGEDGVAPRKKKRKKKQKKKHKKKSGRYSHSSASDSETIYPSDLKKEQEAKRQEAPQLASHFSWLDDLQLPTEQLFCVDRKADPANWTYKSLYRGDVARYRRKGSSALGLDFHKQGVSWEDSEATNKKKKKGGDGKKAADRYYSTVSRQLLKAAPALPALPASSDGSDGTSSAIFLPLCDDEADNKEGEKAHIGQTSSVNPLGVYDSSTALWLQGKGQQDQQKEDTHTEEGTALLGGRTEDFNRRLREQPADTQLWIEFIRYQDEASAAVFKGEEEQQGSDAAERRKSSYRAVLEKKLSIAERAVATNPLCIALQLERLRICQELWEPSALAKEWKKLVFLHPNSTPLWREYLLFTQSYFSSFTVSKVNAAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDILTQQCHFLRQCGHSEKSTAMFQAMIDFTFFKPDSVRELSTKQQVDFFEPFWDSGEARVGELDARGWKAWMLQQERGGWLQPTAEEEEEEEEDEEEVKDRTQPRGTIWLDVESSREATDWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLSSPELRLRLLLRFLSFLGLPVDSVLSVSPGQPGLLLENLSLLTQGNAPQRPLTSYDLADGGINSVGHMTTLQGTRKWVGLGKQGEKFLTNLFNMLQPVLPPHHRAFLSLSWIQYEKLKVMRCLHGGNKKRLRSQGKSSKRVAKRLLKEPDNRSSLVLWREYGHLEWLLGNLDEARKVFSTATALGGTKGLSSRTLCDLCLLWSQLELEDGAKERGGQPADVTASPAVSVLTRLAEGTSASSTSSSLSTVSILKARKSYDQTLAASLSALDQNSKVQDDLMAEKLRLRGLVGCYALFQYLTVSVQAANAVYTQVREKMEELHRTLTAEQQLNSSKEGKLARADADSNRPCVSRVAAECEALAWQQAALLKYHNTVAVFPLVTLRQTLTSALPVWTTSVPLWSIYVQVENRYHSAGRARRFFHSVTRNCSSVVPRLFAIVAEQQRKQLVDAAQGSCLHDDPLSILPENGLSNRIRGLFENAIATETGAHCPLLWRMYIYFLVCEGKVDKATGIFYKALQNIPWCKGLYMDAAQLFPDHLQEFVDLLTEKELRVRLPLEELDILLED"
     misc_feature    467..781
                     /gene="nrde2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(467..490,497..502,512..517,521..523,527..571,
                     578..586,590..598,617..619,641..646,656..661,665..670,
                     677..697,722..733,752..781)
                     /gene="nrde2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    965..1924
                     /gene="nrde2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
     polyA_site      4430
                     /gene="nrde2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ttgtgacgtcatatccctgcgccctgtttctaagtgacgcagcatcatggcgctgtttccagcgtttgcagaagaggcgagcaacaaagttagagattcttccacagagtttgattggctgaagaataagagttttcagacaggagatgcgctctctcttcacggtcgatttctagagaagaccagcgaggagcaaaacaagaaggaaccaagtgtcagcagagatgtcagctctgaagaggacggagaggatggtgtggcacccagaaagaagaaaaggaagaagaaacagaagaaaaagcacaaaaaaaagagcgggaggtattcgcacagcagcgcatctgactctgaaaccatctacccgagtgatctcaaaaaggagcaagaagccaaaaggcaggaggctcctcagttagccagccatttctcttggttggatgacctccagttgcccacagagcagctgttttgcgtggaccgaaaagcagaccccgccaactggacttacaagtctctgtacagaggagacgtagccaggtatagaaggaaaggcagctcggctctgggtttggactttcacaagcagggggtcagctgggaggactcagaggcgactaataagaagaagaagaaaggcggcgacgggaagaaggcagcggacagatactactctacagtcagtcgacagctgctgaaggcagcgcctgctcttcctgcattaccagcgagttctgatggtagcgatggcaccagttctgcaatcttcctccctctgtgtgatgatgaggcagacaataaagaaggagagaaagctcacatagggcagacgtcatcggtgaatcccctcggtgtatatgactcctcgacggccctctggctgcaggggaaaggacagcaagaccagcaaaaggaggacactcacacagaggagggcactgcacttttgggtggcaggaccgaagatttcaacaggcggctgagagagcagccagcagacacacagctgtggatagagttcatacgatatcaggatgaggcgagtgcagctgtgttcaaaggcgaggaggagcagcagggcagtgatgctgctgagcgccgcaagtcttcctacagggcagtgctggagaaaaagctaagcattgcagagcgcgccgtggccaccaaccccctctgcatagctctgcaactcgagagacttcgcatctgccaggagctctgggaaccctcggctctggctaaagagtggaagaaactggtgtttctccacccaaacagcacccccctgtggagggagtatctgctcttcacccagagctatttcagcagcttcactgtgtccaaggtcaacgctgcgtacggcaagtgtctgagcacgctcagtgctgtccgagacggcagcatggtgtctcacccggcactgccaggaatagaggaggatatgttggatatcctcacgcagcagtgtcactttctgcgtcagtgtggtcattcggagaagtcgactgccatgtttcaggcaatgattgactttactttcttcaagcctgacagcgtgcgagagctgtccactaagcagcaggtcgacttctttgagccgttctgggacagcggcgaagcaagggtcggggagctggacgccagaggctggaaagcctggatgctccaacaagagcgaggaggttggctacaacccactgcagaagaggaggaagaagaggaagaggatgaagaggaggtgaaggacaggacccagcccagaggtaccatctggctggatgtggagtcatctcgtgaagccacagactggttgccctggagacccgacaaagccaagggccagtcagaggaggactgtgaggatcctgacagacaggtgttgtttgatgacattggcccgtcactgatttgtttgtcttcgccagagctccgtctccgcctgcttctccgtttcttgagctttttgggtttgcctgtggactcagtgctctcggtttccccaggtcagcctggcttgctgctggagaacctttctctgctcactcaaggtaatgctccccagcgtcctctgacctcctatgatttagctgatggtggcattaactctgtcggtcacatgaccactctccaaggaacacggaagtgggtggggcttgggaaacagggtgagaagttcctcacgaacttgttcaatatgcttcagcctgtgcttccgccccaccaccgagccttcctgtcactcagctggatccagtacgagaaactcaaggtcatgcgctgcttgcacggcggaaataaaaagcgccttcgttctcaggggaagagcagcaagcgagttgccaagcggctgctcaaagaaccagacaatcgctcatcattagtgttgtggcgggagtacggccacctggaatggctactgggcaacctggatgaggcccgcaaagtgttctccactgcaacagcgcttgggggaaccaaagggctgagcagtcgcactctgtgtgatctctgcctgttgtggtcccagctggagttggaagatggagcgaaagagcgagggggtcaaccggctgatgtaacagcatccccggctgtgtctgtactgacccggctagcagaaggaacctctgcatcgtccacttcatcctccctctccacggtttccatcctgaaagccagaaaatcgtacgaccagactctggctgccagtttatcagcactggaccaaaacagtaaagtccaagacgacctgatggcagagaagctgaggttgagaggtctggttggctgctacgctcttttccagtacctcacggtgagcgtgcaagcagccaacgcagtctacacccaggttagagagaagatggaggaactacaccgcacgttaacagctgaacagcagctgaacagcagcaaggagggtaagctcgcaagagctgacgctgactcaaacaggccctgtgtcagcagagtagctgctgagtgtgaggcgttggcctggcagcaggcggcactgctcaagtaccacaacaccgtcgctgtgtttcctctggtgacactgaggcaaacgctgacatcggccctcccagtctggaccaccagcgtccctctctggagcatttatgtacaggtggagaaccgttaccatagcgctggccgtgcacgccggttttttcactctgtaaccagaaactgcagcagcgtggtgccgcgtctctttgccattgttgctgaacagcaaaggaagcagctggtagatgcagctcagggatcgtgtttacatgatgatcccttatccatcctgccggagaatggcctcagcaaccgcatccgtggactgtttgaaaacgccatagcaacagaaactggggctcattgtcctttactttggagaatgtacatctacttcctggtgtgtgaaggaaaagtggataaagccacaggaatcttctacaaggccttacagaatatcccctggtgtaagggtttgtatatggacgcagcgcagctgttccccgatcacctgcaggagtttgtagacctgttgacagagaaagaactgcgagtgcgactgcctttagaagaattggacatactgctggaagactgagcacacacacacaatcttaattcaagtgtgtgttcaaattgtcaaatttgatgggaagaaaaggacaagcacaaaggcaaactcgacacatatacagctgcagtaatttgagaaaagagctgggttttgtttgtttgttttttttgtataaagtgacacaaaatgctttaattgccacaacaaaccactaaaactgtatttcttttacttgatattgtcaataaatacaagattgatctatgtgacatgccttaataaaacatgtaaaatttataccggaagttgttacattccaacttattaagaaaaactctgtggaagtgagaaaggaaaacgctgccactcagcatattaccatgttgccacctcttaaagagtttttaatatttttttttaatcataataaatcaagtaaggattatattttattttctttgtaaacaaacatctactggactgcggagtaaatggggacaaacttgcaggataaaaaaaagacgaactctgctgtgtttccgagtaaccgtattatggagagaaaaagagcaacaaaattcaaagtgcggccgacatgaccgcagccgaacacgtgagagctcactggatcagtttctcattgattcacaagtccaaatgtttaggaagacatctctctttttatgtattctcctttgaacttgtacagtagcttaactcaattattatgcatacaattcttttgtaaatacaacaccattattgtggtactgtttaattccattttgtattgtactgatgtttaagtaaaggtttgagaaaaaaaaacagtttctcattgacagaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]