LOCUS       XM_005891917            1865 bp    mRNA    linear   MAM 12-DEC-2024
DEFINITION  PREDICTED: Bos mutus vimentin (VIM), mRNA.
ACCESSION   XM_005891917
VERSION     XM_005891917.3
DBLINK      BioProject: PRJNA1191006
KEYWORDS    RefSeq.
SOURCE      Bos mutus (wild yak)
  ORGANISM  Bos mutus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091629) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 12, 2024 this sequence version replaced XM_005891917.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_027580195.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/05/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Bos mutus"
                     /mol_type="mRNA"
                     /isolate="GX-2022"
                     /db_xref="taxon:72004"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="blood"
     gene            1..1865
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 18 Proteins"
                     /db_xref="GeneID:102283001"
     CDS             144..1544
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_005891979.1"
                     /db_xref="GeneID:102283001"
                     /translation="

MSTRSVSSSSYRRMFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPTTSRTLYTSSPGGVYATRSSAVRLRSGVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     misc_feature    183..446
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    447..1373
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     polyA_site      1865
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tctgccactctcgctccggtgtccccgcgccagagacgcagcagcgctccctctgcccacacccaccgcgccctcgcgctcgcctctccttccggagccagtccgtgctaccgcagtcgcccagtccaccaccctctgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccgcgagtcggccgagctccacccggagctacgtgaccacgtccacccgcacctacagcctgggcagcgcgctgcgccccaccaccagccgcaccctctacacctcgtccccgggtggcgtgtacgccacgcgctcctcggccgtgcgcctgcggagcggcgtgcccggcgtgcggctgctgcaggactcggtggacttctcgttggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggctgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgaagacatcatgaggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgagagcactctgcagtctttcagacaggatgttgacaatgcctctttggcacgtcttgacctggagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcatgatgaggaaatccaggagcttcaggcccagattcaagaacagcacgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtccgtcagcagtatgagagcgtggccgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgctgacctctctgaagctgctaaccgcaacaatgatgccctgcgccaggccaagcaggagtcaaatgagtaccgccggcaggtgcagactcttacctgcgaggtggatgcgctcaaagggactaacgagtctctggaacgccagatgcgtgaaatggaagagaacttctctgtggaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgtcacctgcgcgaataccaagacctgctgaatgtcaagatggcgctcgacatcgagatcgccacctacaggaagctgctggaaggagaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattcactccctctggttgacactcactcaaaaaggacacttctgattaagacggtggaaaccagagatggacaggttatcaacgaaacttcccagcatcacgatgatctggaataaaaactgcacatacttcgtgcagcaaaatactaccagcaagaaggaaaaaaaaaatccatatcttaaagaaacagctttcaagtgcctttctgcagttttttcaggagcgcaagatagatttggaataggaataagccctagttcttgaaccaacacccgtaaaagatttagaaaaaagtttacaacataatctagtttaccgaagacgccttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccatcaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactctg

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