2024-03-29 18:23:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005605398 3891 bp mRNA linear MAM 23-JAN-2018 DEFINITION PREDICTED: Equus caballus NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_005605398 VERSION XM_005605398.3 DBLINK BioProject: PRJNA19129 KEYWORDS RefSeq. SOURCE Equus caballus (horse) ORGANISM Equus caballus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_009167.3) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 23, 2018 this sequence version replaced XM_005605398.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus caballus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3891 /organism="Equus caballus" /mol_type="mRNA" /isolate="Twilight" /db_xref="taxon:9796" /chromosome="24" /sex="female" /breed="thoroughbred" gene 1..3891 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 134 samples with support for all annotated introns" /db_xref="GeneID:100062646" /db_xref="VGNC:VGNC:20881" CDS 92..3589 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_005605455.2" /db_xref="GeneID:100062646" /db_xref="VGNC:VGNC:20881" /translation="
MALFPAFAGVSEAPASGSSRKELDWLSNPSFCVGSIPSLSQQTEETTALASEGLPLTRSPLKSEPSEESDTNRKLKSISRKKKKEKKKKRKHQHHKKTKRKHGQSSSSGSEPDTDSEKDRSYRSIRDSKRESEKPNQQNNATADSGHRLVWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTGKKHPHKRVERYFMKKNVGLMNIDGVAVSSQTAPPSSEPVSFIPVKDSDDAAPPVTAWLHPLGIYDQSTTQWLQGKGASEQESKQPDSQVDRESALLKAKVEEFNRRVREHPRDVQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLLLEKKLAILERAIESNPSCVDLKLAKLQLCTELWEPATLLREWQKLIFLHPNNTALWHKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDEEEEPEDDDQEIRDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQDLQFRLIAAFLQFLGVPCGVSPPASCLYLAMDENSIFDNGLCDEKPLTFLNLSFSGVSCVGRMDQLGCRRWTRAHGREGEDFIRNVFHLVLPLFSGKERSQLCLSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNDFCLWKQYAHLEWLLGNMEDARKVFDTALSMAGSRELKDHELCELSLLYAELEVELLLDSRGAATARAVHILTRLTENGPCGPYAGQVLAVHILKARKAYEHALQDCLGEGCVSGPAPTNSLNCLTSLVKCFMLFQYLTVGIDAAVRIYEQVFAKLKGSGSPECCGQDDSAGTQRLSSVLEAVTLMHTSLLRFHMKVSVYPLAPLREALSEALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDAVTRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVHATIPETGLTHRIKALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYMDAVEYFPDEMQEILDLMTEKELRVRLPVEELELLLED"
misc_feature 575..865 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(575..601,608..613,623..628,632..634,638..682, 689..697,701..709,731..739,749..754,758..763,770..790, 815..826,836..865) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1031..2029 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cagagtgcatcgcgaccgcgaaggcctcactaccggcgcccgctcaccggcgccatttctgtggaggggaacggcggtgcggcctgtgatcatggcgctgttcccggcctttgcgggcgttagtgaagctcccgctagcggaagttctaggaaagaattagactggctgagcaacccaagcttttgtgttggaagcataccatctctgagccaacaaactgaagagaccacagctcttgcttctgaagggttgccactgacaaggagtcctctgaaatcagagccatcagaggaaagtgacactaacagaaagctcaaatctataagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcatcataagaaaaccaagagaaaacatgggcagtcgagtagcagtggatctgagccagatactgattctgaaaaggacagatcttacagaagcatcagagacagtaaaagggaatcagagaaaccaaatcagcaaaataatgccactgctgatagtggacatcgccttgtttggcttgaggacgttcaggctctgacaggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctctaccgtggagacatagcaaggtacaagaggaaaggagactcctgccttggcattaacccaaagaagcagtgtatatcttgggaggggacttccacgggaaagaagcatccacacaagcgtgttgaacgctattttatgaagaagaacgtgggattaatgaacattgacggagttgccgttagcagtcaaactgcccctccctcgtctgagcccgtctcgtttatcccagtgaaggactcagatgacgcggctcctcctgttacagcctggttgcaccctctggggatttatgatcagtccaccacacagtggttacaaggaaagggtgcttcagagcaagaatcaaagcagccagactcacaggtggacagagagagcgcgctgctcaaggccaaggtggaggagtttaacaggagggtccgggagcatcctcgggatgttcagctgtggatggcgtttgttgcttttcaggacgaggtcatgaaaagtccgggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctgcttctggagaagaagctggccatcctggagcgggccattgaaagcaacccgagctgcgtggacctgaagctcgccaagctgcagctctgcacggagctctgggagcccgccaccctgctcagggagtggcagaaactcatattcttacatcccaacaatacagccctttggcataaatatcttttattttgccagagccagtttagcaccttttcaatatcaaaaattcacagtctttatggaaagtgcttgagtaccctgtctgctgttaaggatggcagcatcttgtctcaccctgagttgcccggcaccgaggaggccatgtttgccctctttcttcagcagtgccactttctgcggcaggccggtcactctgagaaggccgtctctctgttccaggccatggtcgacttcaccttcttcaaaccggacagtgtgaaagggctgcctaccaaaggccaggtggagttctttgagcccttttgggacagtggagagccccgggctggggagaagggcgcccggggctggagagcgtggatgcaccagcaggagcggggtggctgggtggtcatcagtccagatgatgaggaggaagaaccagaagatgatgatcaggaaataagagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccagaggcactggcggccgtggcgcccagataagaccaagaagcagactgaggaagactgtgaggatccagagagacaggtgttgtttgatgatattggacaatctctgatccgactttccagccaggatcttcagtttcggctgattgcggccttcctgcagttcttgggcgtgccttgtggcgtcagccctcccgcctcctgcctttatctggccatggacgagaacagcatctttgataacggactttgtgatgaaaagccgttgactttcctcaacctgtcattttctggcgtcagctgtgttggccgcatggaccagttgggctgccggcgctggaccagagctcacggtcgagagggcgaggacttcatccgcaacgtcttccacctggtgctgcctttgttttccggcaaggagagatctcagctctgcctctcctggttacagtacgagattgcaaaggtcatctggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaagctagccaagaatctccttaaggagccggaaaaccgcaacgatttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacatggaggacgccaggaaggttttcgatacagcactcagcatggcagggagcagagaactgaaggatcacgaactctgtgagctcagtctgctctacgctgagctggaggtggagctgttgctagactcgagaggggccgccacagcccgagctgttcacatcttaaccaggctgactgagaacgggccctgtgggccctacgccgggcaggtcttggccgttcacattttgaaagctcggaaggcttatgaacacgcactgcaggactgcttgggtgagggctgtgtctctggaccggctcccaccaactccttgaactgcctaactagcttggtcaaatgctttatgctctttcagtatttgaccgtggggatcgatgccgctgtgcggatatacgagcaagtatttgcaaaactgaagggctctggttccccagaatgctgtggccaggatgacagtgccggcacccagcgtctgagcagtgttctcgaggctgtcacactgatgcacaccagcctgctcagattccacatgaaagtcagcgtttacccgctggcccctctgcgagaggcactctccgaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtctcacagtgccagtaagaccagaagattctttgatgcagtcaccaggtctgctaaacccttagagccttggttgtttgccattgaagccgagaaaatgaggaagagactagtggaaactgttcagagggtagatggtagagaggtccacgccacaattcctgagaccggcttgacacatcggatcaaagccctgtttgaaaatgcaatgcggagtgacagcggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaacaaggaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgttgtacatggacgctgtggagtacttccccgatgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccggtggaggagctggagcttctgcttgaggactagagaccaggaagggaatggggaccacatctctgaggcaacgttgcctgccctgtcggaaccaggatgggcaagaggagaccagtgatgcacatgtgcaagcgtgtgttaacagacttttgctttagaagtttctcttgagaatgtctgggttaccagtctctcacctcttgcatattttttgcatgtgcaaatgacacaaaagctattgttttacatattatatatgtgcacatgtgtatatatgtctgtagacaagaatcacgctaagtgattacaaaacctactgtggttggtgtgtgcaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]