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2024-03-29 18:23:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_005605398            3891 bp    mRNA    linear   MAM 23-JAN-2018
DEFINITION  PREDICTED: Equus caballus NRDE-2, necessary for RNA interference,
            domain containing (NRDE2), mRNA.
ACCESSION   XM_005605398
VERSION     XM_005605398.3
DBLINK      BioProject: PRJNA19129
KEYWORDS    RefSeq.
SOURCE      Equus caballus (horse)
  ORGANISM  Equus caballus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_009167.3) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 23, 2018 this sequence version replaced XM_005605398.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Equus caballus Annotation Release
                                           103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3891
                     /organism="Equus caballus"
                     /mol_type="mRNA"
                     /isolate="Twilight"
                     /db_xref="taxon:9796"
                     /chromosome="24"
                     /sex="female"
                     /breed="thoroughbred"
     gene            1..3891
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 134 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100062646"
                     /db_xref="VGNC:VGNC:20881"
     CDS             92..3589
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog"
                     /protein_id="XP_005605455.2"
                     /db_xref="GeneID:100062646"
                     /db_xref="VGNC:VGNC:20881"
                     /translation="
MALFPAFAGVSEAPASGSSRKELDWLSNPSFCVGSIPSLSQQTEETTALASEGLPLTRSPLKSEPSEESDTNRKLKSISRKKKKEKKKKRKHQHHKKTKRKHGQSSSSGSEPDTDSEKDRSYRSIRDSKRESEKPNQQNNATADSGHRLVWLEDVQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTGKKHPHKRVERYFMKKNVGLMNIDGVAVSSQTAPPSSEPVSFIPVKDSDDAAPPVTAWLHPLGIYDQSTTQWLQGKGASEQESKQPDSQVDRESALLKAKVEEFNRRVREHPRDVQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLLLEKKLAILERAIESNPSCVDLKLAKLQLCTELWEPATLLREWQKLIFLHPNNTALWHKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVISPDDEEEEPEDDDQEIRDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQDLQFRLIAAFLQFLGVPCGVSPPASCLYLAMDENSIFDNGLCDEKPLTFLNLSFSGVSCVGRMDQLGCRRWTRAHGREGEDFIRNVFHLVLPLFSGKERSQLCLSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNDFCLWKQYAHLEWLLGNMEDARKVFDTALSMAGSRELKDHELCELSLLYAELEVELLLDSRGAATARAVHILTRLTENGPCGPYAGQVLAVHILKARKAYEHALQDCLGEGCVSGPAPTNSLNCLTSLVKCFMLFQYLTVGIDAAVRIYEQVFAKLKGSGSPECCGQDDSAGTQRLSSVLEAVTLMHTSLLRFHMKVSVYPLAPLREALSEALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDAVTRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVHATIPETGLTHRIKALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYMDAVEYFPDEMQEILDLMTEKELRVRLPVEELELLLED"
     misc_feature    575..865
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(575..601,608..613,623..628,632..634,638..682,
                     689..697,701..709,731..739,749..754,758..763,770..790,
                     815..826,836..865)
                     /gene="NRDE2"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    1031..2029
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
ORIGIN      
cagagtgcatcgcgaccgcgaaggcctcactaccggcgcccgctcaccggcgccatttctgtggaggggaacggcggtgcggcctgtgatcatggcgctgttcccggcctttgcgggcgttagtgaagctcccgctagcggaagttctaggaaagaattagactggctgagcaacccaagcttttgtgttggaagcataccatctctgagccaacaaactgaagagaccacagctcttgcttctgaagggttgccactgacaaggagtcctctgaaatcagagccatcagaggaaagtgacactaacagaaagctcaaatctataagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcatcataagaaaaccaagagaaaacatgggcagtcgagtagcagtggatctgagccagatactgattctgaaaaggacagatcttacagaagcatcagagacagtaaaagggaatcagagaaaccaaatcagcaaaataatgccactgctgatagtggacatcgccttgtttggcttgaggacgttcaggctctgacaggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctctaccgtggagacatagcaaggtacaagaggaaaggagactcctgccttggcattaacccaaagaagcagtgtatatcttgggaggggacttccacgggaaagaagcatccacacaagcgtgttgaacgctattttatgaagaagaacgtgggattaatgaacattgacggagttgccgttagcagtcaaactgcccctccctcgtctgagcccgtctcgtttatcccagtgaaggactcagatgacgcggctcctcctgttacagcctggttgcaccctctggggatttatgatcagtccaccacacagtggttacaaggaaagggtgcttcagagcaagaatcaaagcagccagactcacaggtggacagagagagcgcgctgctcaaggccaaggtggaggagtttaacaggagggtccgggagcatcctcgggatgttcagctgtggatggcgtttgttgcttttcaggacgaggtcatgaaaagtccgggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctgcttctggagaagaagctggccatcctggagcgggccattgaaagcaacccgagctgcgtggacctgaagctcgccaagctgcagctctgcacggagctctgggagcccgccaccctgctcagggagtggcagaaactcatattcttacatcccaacaatacagccctttggcataaatatcttttattttgccagagccagtttagcaccttttcaatatcaaaaattcacagtctttatggaaagtgcttgagtaccctgtctgctgttaaggatggcagcatcttgtctcaccctgagttgcccggcaccgaggaggccatgtttgccctctttcttcagcagtgccactttctgcggcaggccggtcactctgagaaggccgtctctctgttccaggccatggtcgacttcaccttcttcaaaccggacagtgtgaaagggctgcctaccaaaggccaggtggagttctttgagcccttttgggacagtggagagccccgggctggggagaagggcgcccggggctggagagcgtggatgcaccagcaggagcggggtggctgggtggtcatcagtccagatgatgaggaggaagaaccagaagatgatgatcaggaaataagagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccagaggcactggcggccgtggcgcccagataagaccaagaagcagactgaggaagactgtgaggatccagagagacaggtgttgtttgatgatattggacaatctctgatccgactttccagccaggatcttcagtttcggctgattgcggccttcctgcagttcttgggcgtgccttgtggcgtcagccctcccgcctcctgcctttatctggccatggacgagaacagcatctttgataacggactttgtgatgaaaagccgttgactttcctcaacctgtcattttctggcgtcagctgtgttggccgcatggaccagttgggctgccggcgctggaccagagctcacggtcgagagggcgaggacttcatccgcaacgtcttccacctggtgctgcctttgttttccggcaaggagagatctcagctctgcctctcctggttacagtacgagattgcaaaggtcatctggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaagctagccaagaatctccttaaggagccggaaaaccgcaacgatttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacatggaggacgccaggaaggttttcgatacagcactcagcatggcagggagcagagaactgaaggatcacgaactctgtgagctcagtctgctctacgctgagctggaggtggagctgttgctagactcgagaggggccgccacagcccgagctgttcacatcttaaccaggctgactgagaacgggccctgtgggccctacgccgggcaggtcttggccgttcacattttgaaagctcggaaggcttatgaacacgcactgcaggactgcttgggtgagggctgtgtctctggaccggctcccaccaactccttgaactgcctaactagcttggtcaaatgctttatgctctttcagtatttgaccgtggggatcgatgccgctgtgcggatatacgagcaagtatttgcaaaactgaagggctctggttccccagaatgctgtggccaggatgacagtgccggcacccagcgtctgagcagtgttctcgaggctgtcacactgatgcacaccagcctgctcagattccacatgaaagtcagcgtttacccgctggcccctctgcgagaggcactctccgaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtctcacagtgccagtaagaccagaagattctttgatgcagtcaccaggtctgctaaacccttagagccttggttgtttgccattgaagccgagaaaatgaggaagagactagtggaaactgttcagagggtagatggtagagaggtccacgccacaattcctgagaccggcttgacacatcggatcaaagccctgtttgaaaatgcaatgcggagtgacagcggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaacaaggaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgttgtacatggacgctgtggagtacttccccgatgagatgcaggagatcctggacctgatgactgagaaggagctccgggtgcgcctgccggtggaggagctggagcttctgcttgaggactagagaccaggaagggaatggggaccacatctctgaggcaacgttgcctgccctgtcggaaccaggatgggcaagaggagaccagtgatgcacatgtgcaagcgtgtgttaacagacttttgctttagaagtttctcttgagaatgtctgggttaccagtctctcacctcttgcatattttttgcatgtgcaaatgacacaaaagctattgttttacatattatatatgtgcacatgtgtatatatgtctgtagacaagaatcacgctaagtgattacaaaacctactgtggttggtgtgtgcaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]