2024-05-03 06:41:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005587531 3426 bp mRNA linear PRI 08-DEC-2021 DEFINITION PREDICTED: Macaca fascicularis retina and anterior neural fold homeobox 2 (RAX2), transcript variant X2, mRNA. ACCESSION XM_005587531 VERSION XM_005587531.2 DBLINK BioProject: PRJNA690070 KEYWORDS RefSeq. SOURCE Macaca fascicularis (crab-eating macaque) ORGANISM Macaca fascicularis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052273) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 8, 2021 this sequence version replaced XM_005587531.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Macaca fascicularis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3426 /organism="Macaca fascicularis" /mol_type="mRNA" /isolate="CE1976F" /db_xref="taxon:9541" /chromosome="19" gene 1..3426 /gene="RAX2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 15 ESTs, 5 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:102136169" CDS 100..654 /gene="RAX2" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2 isoform X2" /protein_id="XP_005587588.2" /db_xref="GeneID:102136169" /translation="
MFLSPSEGPAAEGGSLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLAKEHAQALDRAWPPA"
misc_feature order(181..195,199..201,250..252,268..270,307..309, 313..318,325..330,334..342,346..351) /gene="RAX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(187..189,196..198,316..318,325..330,337..339) /gene="RAX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 190..348 /gene="RAX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" polyA_site 3426 /gene="RAX2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggtctggcagggccaggccacagcagacgcggcgccgggccctctggggcaggtgccctgtggagattgacagaggggctgccgtgggcggtgggagccatgttcctgagcccgagcgagggcccggcggccgagggtgggagtctggggccgggcgaggaggcccccaagaagaagcaccggaggaaccgcaccaccttcaccacctaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggatgtctacagccgtgaggagctggcggccaaggtgcacctacctgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcggctggagtcaggctcgggtgccgtggcagccccgagacttcctgaggccccggcgctgcccttcgcccgccccccggccatgtcgctgcccctggagccctggttgggccctggaccgccggccgtgccaggcctcccccgcctcctgggcccaggcccggggctgcaagcatccttcgggcctcatgcctttgctcctaccttcgcagacggcttcgccctggaggaggcgtccctgcggctgctggccaaggaacacgcacaggctctggacagggcttggccgccagcctgagcctgctgccctcctgggccccctcctcggttcagcctgagagctggagacgtgccctggtgacagccaccacgccttggcctaggctgaggtcacggagcaaccgtggtcaggccaggccaccatcactggggagcgggaccagagacaggctgctgggtcccccgcccccatcctgtcccccacccgatcaccacccgtcctgctggcagcggaccggccccagtgtcaggcaggaggtgacccaagtattcctaggccaaggacggggaccctcctcccctcctggggcctcagtctcccgtctgttaatggggtgtgggggcctctgaggttcccgggctgtgaggctgagtggcggggccgctgactctgtaagatgagtgtacatctctctgctgctcccactccccatcagcagagctgcccgctctccaggctcccggtccccccgaaatgacagtaacggcagctcccgcgagcctgctctcctttcacggtgcacccaccacgtgagcgctcccctctccgttgcgccctggacctcgggcacagccgtcagcccattctacagagagggaaactggggctcaggcaggaagccaggtccccaaggttgcacggctaggagtgggtgaagctgcctttcagacccatcaccggcccccccatccgaggcacggcagcaggttctggagggagggtggggcctcgtgtggaggcgggctggtgctggctgtgtcgtcatcagcccctgttcctcgcgtccccacagaccccaggccccgtgcatgtcctccagccctgcggaggcactgctggcgtctgctctgtccaacccagttgcattgcccaagagctctgaggaaggaggctgtcgcggggctgagaacccgctgttactggcaagcatggctggcccagtgcagcaggaggggccctgagccatgggatgggacagtcttggccagggccaccccctgagacagaagtgcggcaccagggcaggagctgcagtagctaccctcctcgtctccagcccgggctccccagatcactcccagatcaccagggcaccccatctccaggcggcacctcacacactagtcttgtggcccaacgcccagccaatgtcactgtgcaccaggcactggggacacggcagtaagcacaagaaagattttttttttctttttaacctaaaccaggccaggtgtggtggctcatgcctgtaatcccagtgctttgggacgctgaggtgggaggattgcttgagaccagtctgggtgacatagcaagactcagtctccacaaacatttttaaaacgtgccaggtgtagtggtgcacacttgtcatcccagggacccgagaagctgaggcaggaggattgcttgagcccagaaggtcgaggctgagctgtgatcacaccactgcattccagcctgtgcaacagagccagaccccgactcaaaacaaataaataaaaaacaaacctaaagcataagacttcagtgataagcgatagggagaaaaaccaaccaggaaaggcagatggggagtgtggcaggggctgcaattgtaacagggagttctggaggaggggaggctggcgtgaaggtggagaccggggcgggagggaggtggtctaggggaggagggggctgggcagaggcataggccgtgcaaaggccctggggcagggccgcgcctggtgcattggcagaatagcaaggaggcccgtgtggctggagtacagtgaggagggggaggagggaggtgacggggaggccaggcagggcagtggctgttataactttgatttttgccctgagaaccttggggaataacaggagggtgggaacagggctggcaccaccagctgtgagtgcaagagaaggcgtgctcacacccccgcctgcccggggaggccaccggggacagcaggtgcgtggtaatccgctccactccagagttccctaagaggatgaaggttagggtttccctgggacgggaagaattagcctcgggtcctcaccccgcccatccagcttgtggacagaggaagccagagggtgggtgagcccagcccaaagcccctagggtacccacctaggaatgggtggggctgctgtggcaagggtagggatgagggcatgacccttgggggttctgcaggatgtggggtccatgaggtgatctacccccaccaagaggccccatcactccctaactaggtgtcccccctcccgcctcctccaatctggtgcgctccagccctcaggatcccgccccattgctcctcatcacagccaggcagggcaggagttgggactgcagggaggccagtcctcactcgggctgtgggtcagggtcagggtgctgaaagcagactccagagggtggactgggggcggaggttgagacctgggctccagtggagtggacagaggacttgggggtgcagaaggaaggcccaagcccctgggctccagggataggccatcgaggaccacactgtgactgtggcaggaaggaaggggcagtcccttccctctgattctacttgctgtgctggtgaggacatcagccaggagccctggggctaccctgcccatgagtgcgagcccctgggggatccaaggaccctgagatggagagggccttgggtctgaatatggaagcacctggatccagccacacctgcagccacaccgctacccccccggacatctctgttcttgaagctcataaagcctcttttctgactctga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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