2024-04-25 08:34:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004697379 3149 bp mRNA linear MAM 06-DEC-2021 DEFINITION PREDICTED: Echinops telfairi argonaute RISC catalytic component 2 (AGO2), mRNA. ACCESSION XM_004697379 VERSION XM_004697379.3 DBLINK BioProject: PRJNA193504 KEYWORDS RefSeq. SOURCE Echinops telfairi (small Madagascar hedgehog) ORGANISM Echinops telfairi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022103896.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 6, 2021 this sequence version replaced XM_004697379.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Echinops telfairi Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3149 /organism="Echinops telfairi" /mol_type="mRNA" /isolate="266" /db_xref="taxon:9371" /chromosome="Unknown" /sex="female" /country="Germany: Ludwig Maximilians University, Munich" gene 1..3149 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101648413" CDS 113..2563 /gene="AGO2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_004697436.1" /db_xref="GeneID:101648413" /translation="
MDIPKIDIYHYELDIKPEKCPRRVNRYSLRPRAQPGKPDTCGDKRLCPPATEPWQPTGTCLTMCDLHPQVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLSSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKTLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQVLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature <341..481 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 509..661 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 662..1024 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(818..820,863..865,905..907,917..919,971..973, 992..994,998..1000) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1157..2434 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1568..1570,1580..1582,1616..1627,1634..1636, 1658..1660,1667..1669,1679..1681,1691..1693) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1772..1774,1778..1780,1988..1990,2402..2404) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
gtcttctctggcagcaacaccccccctccaaggatatgccttcaagccccctccgagacccgacttcgggacctctggaagaacaatcaaattacaagccaatttcttcgaaatggacattcccaaaatcgacatctaccactatgaattggacatcaagcctgagaaatgcccacgcagagtcaacaggtattctctcagaccccgcgcacagcctgggaagccagatacctgtggagacaagcgcctgtgccctcctgccacagaaccgtggcagcccactgggacgtgcctgaccatgtgtgatctgcacccacaggtggagctggaggtcaccctgcctggggaaggcaaggaccgcatcttcaaggtgtccatcaagtgggtgtcctgcgtgagcctgcaggcgttacacgatgcactttcagggcggctatccagcgtgcccttcgaaacgatccaggccctggacgtggtcatgcggcacctgccgtccatgaggtacacccctgtgggccgctccttctttaccgcctccgagggctgttccaaccccctgggtgggggccgagaggtctggtttggcttccaccagtccgtccgaccctcgctttggaaaatgatgctgaatattgacgtctctgcaacggccttttataaggcacagcctgtgatcgagttcgtttgtgaagttctggattttaaaagtattgaagaacaacaaaaaactctgacagattcccaaagggtcaagtttaccaaagaaatcaaaggtctaaaggtggagataacgcactgtggccagatgaaaaggaagtaccgagtctgcaacgtgacccggcggcctgccagccaccaaacgttcccgctgcagcaggagagcggccagaccgtggagtgcacggtggcccagtacttcaaggacaggcacaagctggtgctgcgctacccccacctcccatgtttacaagttgggcaggagcagaaacacacctaccttcctctggaggtctgcaacatagtggctggacagaggtgcatcaagaaacttactgacaatcaaacctcaaccatgatcagagcgacggccaggtctgcgcccgaccgccaggaagagatcagcaaactgatgcgaagcgccagtttcaacacagatccctacgtgcgtgaattcggcatcatggtcaaagatgagatgacagacgtgaccgggcgggtcctccagccaccctccatcctctacgggggcaggaacaaggcgattgccacccctgtgcagggtgtctgggacatgcggaacaagcagtttcacacgggcatcgagatcaaggtgtgggccatcgcctgctttgccccccagcgccaatgcactgaagtccacctgaagtccttcacagagcagctgcgcaagatctccagggacgccgggatgcccatccagggccagccgtgtttctgcaagtacgcccagggcgccgacagtgtggagcccatgttccgccacctcaagaacacctacgccggcctgcagctggtcgtggtcatcctgccgggaaagacccctgtctatgctgaagtgaagcgtgtgggtgacaccgtgctggggatggccacgcagtgtgtgcagatgaagaacgtgcagcggaccaccccgcagaccctgtccaacctctgcctgaagatcaacgtcaagctgggaggggtgaacaacatcctgctgccccagggcaggcctccagtcttccagcagccggtcatcttcctgggtgccgacgtcacccacccgcccgctggagacgggaagaagccttcaatcgctgctgtcgtgggcagcatggatgcccaccccaaccgctactgtgccaccgtgcgtgtgcagcagcaccggcaggagatcatccaggacctggcagccatggtgcgcgagctgctcatccagttctacaagtccacgcgcttcaagcccacacgcatcatcttctaccgagacggcgtctccgagggccagttccagcaggtcctgcaccacgagctgctggccatccgagaggcctgcatcaagctggagaaggactaccagccggggatcaccttcatcgtggtccagaaacgccaccacacccgcctcttctgcaccgacaagaacgagcgggtcgggaagagtggaaacatcccagcaggcaccactgtggacacaaagatcacccacccaaccgagtttgatttctacctgtgcagccacgccggcatccagggcacaagccggccctcccactaccacgtcctgtgggacgacaaccggttctcctccgacgagctgcaggtcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtgtccatccctgcgcctgcctactatgcccatctggtggccttccgggccaggtaccacctggtggacaaggagcatgacagtgcggaaggaagccatacctctgggcagagcaacggccgagaccaccaggccctggccaaggccgtgcaggtccaccaggacacgctgcgcaccatgtacttcgcctgacgtgtccgagtgcttgcgacggcataccgagttggattcacacgagaccagctacactcagaccaacagcccagccccccgagacagccagccttggaccatgagacgcccctgcgttcccagactcccacggcccaggaggcctttcgtcccagatttcaaactcggattttgaactgcagacctgtatgagacccccaccccccgcccgccaccttccccccagtgttgtaggaaatagggtttgccaaaatctataagctgcttattaaaaatagaagtccgtgtttcctaaaagaaaaagggaaaaggtagttctcctaaaaccaatcgacaaactcagggctttacaacatttttaatgtatctggtcgttcaagttaacatgtcttttgacccgtggccctccatgaacgcgggtggactccaacgagctgtgaggacccccaagatgagaacaacacagagctcctcctgccccaccctccaccccgtgtcgtcactgcggtgggtgtcacagtgaccctggtggggtcccgggagggcactgtgcccggggtggggggtggggggggtggcgaccgca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]