2024-04-24 16:38:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003646255 438 bp mRNA linear PLN 02-JUN-2017 DEFINITION Eremothecium cymbalariae DBVPG#7215 hypothetical protein partial mRNA. ACCESSION XM_003646255 VERSION XM_003646255.1 DBLINK BioProject: PRJNA78153 BioSample: SAMN03081426 KEYWORDS RefSeq. SOURCE Eremothecium cymbalariae DBVPG#7215 ORGANISM Eremothecium cymbalariae DBVPG#7215 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium. REFERENCE 1 (bases 1 to 438) AUTHORS Wendland,J. and Walther,A. TITLE Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics JOURNAL G3 (Bethesda) 1 (7), 539-548 (2011) PUBMED 22384365 REFERENCE 2 (bases 1 to 438) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 438) AUTHORS Wendland,J. TITLE Direct Submission JOURNAL Submitted (20-DEC-2010) Yeast Biology, Carlsberg Laboratory, Gamle Carlsberg Vej 10, Copenhagen V DK-1899, Denmark COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_016452). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..438 /organism="Eremothecium cymbalariae DBVPG#7215" /mol_type="mRNA" /strain="DBVPG#7215" /db_xref="taxon:931890" /chromosome="4" gene <1..>438 /locus_tag="Ecym_4440" /db_xref="GeneID:11470087" CDS 1..438 /locus_tag="Ecym_4440" /note="similar to Ashbya gossypii AAR108C 1-intron" /codon_start=1 /product="hypothetical protein" /protein_id="XP_003646303.1" /db_xref="GeneID:11470087" /translation="
MGKGKPRGLNSARKLRVHRRNNRWAELSYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGVESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAVGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS"
misc_feature 10..435 /locus_tag="Ecym_4440" /note="40S ribosomal S23; Provisional; Region: PTZ00067" /db_xref="CDD:185422" misc_feature order(82..84,88..102,106..108,112..129,133..153,184..210, 226..234,256..258,262..273,310..330,337..348,364..369, 382..384,388..390,418..426) /locus_tag="Ecym_4440" /note="18S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature order(184..189,340..342) /locus_tag="Ecym_4440" /note="streptomycin interaction site [chemical binding]; other site" /db_xref="CDD:239465" misc_feature 187..192 /locus_tag="Ecym_4440" /note="28S rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature order(190..207,268..294) /locus_tag="Ecym_4440" /note="aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site" /db_xref="CDD:239465" misc_feature 295..297 /locus_tag="Ecym_4440" /note="eEF2 interaction site [polypeptide binding]; other site" /db_xref="CDD:239465" ORIGIN
atgggtaagggtaagccaagaggtttgaactccgctagaaagttgcgtgtccacagaagaaacaaccgttgggccgaactgtcctacaagaagagattgttgggtactgccttcaagtcttctcccttcggtggatcatctcacgccaagggtattgtgttggaaaagattggtgttgaatccaaacagcccaactctgccattagaaagtgtgtcagagttcaattgattaagaacggtaagaaggtgactgctttcgtccctaacgatggttgtttgaactttgttgacgaaaacgacgaggtcttgttggctggtttcggtagaaagggtaaagctgtgggtgatattccaggtgttagattcaaggtcgtcaaggtctctggtgtgtccttgttggctttgtggaaggaaaagaaggaaaagccaagatcctaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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