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2024-04-24 16:38:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_003646255             438 bp    mRNA    linear   PLN 02-JUN-2017
DEFINITION  Eremothecium cymbalariae DBVPG#7215 hypothetical protein partial
            mRNA.
ACCESSION   XM_003646255
VERSION     XM_003646255.1
DBLINK      BioProject: PRJNA78153
            BioSample: SAMN03081426
KEYWORDS    RefSeq.
SOURCE      Eremothecium cymbalariae DBVPG#7215
  ORGANISM  Eremothecium cymbalariae DBVPG#7215
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Eremothecium.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Wendland,J. and Walther,A.
  TITLE     Genome evolution in the eremothecium clade of the Saccharomyces
            complex revealed by comparative genomics
  JOURNAL   G3 (Bethesda) 1 (7), 539-548 (2011)
   PUBMED   22384365
REFERENCE   2  (bases 1 to 438)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 438)
  AUTHORS   Wendland,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2010) Yeast Biology, Carlsberg Laboratory, Gamle
            Carlsberg Vej 10, Copenhagen V DK-1899, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_016452).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Eremothecium cymbalariae DBVPG#7215"
                     /mol_type="mRNA"
                     /strain="DBVPG#7215"
                     /db_xref="taxon:931890"
                     /chromosome="4"
     gene            <1..>438
                     /locus_tag="Ecym_4440"
                     /db_xref="GeneID:11470087"
     CDS             1..438
                     /locus_tag="Ecym_4440"
                     /note="similar to Ashbya gossypii AAR108C 1-intron"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_003646303.1"
                     /db_xref="GeneID:11470087"
                     /translation="
MGKGKPRGLNSARKLRVHRRNNRWAELSYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGVESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAVGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS"
     misc_feature    10..435
                     /locus_tag="Ecym_4440"
                     /note="40S ribosomal S23; Provisional; Region: PTZ00067"
                     /db_xref="CDD:185422"
     misc_feature    order(82..84,88..102,106..108,112..129,133..153,184..210,
                     226..234,256..258,262..273,310..330,337..348,364..369,
                     382..384,388..390,418..426)
                     /locus_tag="Ecym_4440"
                     /note="18S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239465"
     misc_feature    order(184..189,340..342)
                     /locus_tag="Ecym_4440"
                     /note="streptomycin interaction site [chemical binding];
                     other site"
                     /db_xref="CDD:239465"
     misc_feature    187..192
                     /locus_tag="Ecym_4440"
                     /note="28S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239465"
     misc_feature    order(190..207,268..294)
                     /locus_tag="Ecym_4440"
                     /note="aminoacyl-tRNA interaction site (A-site)
                     [nucleotide binding]; other site"
                     /db_xref="CDD:239465"
     misc_feature    295..297
                     /locus_tag="Ecym_4440"
                     /note="eEF2 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239465"
ORIGIN      
atgggtaagggtaagccaagaggtttgaactccgctagaaagttgcgtgtccacagaagaaacaaccgttgggccgaactgtcctacaagaagagattgttgggtactgccttcaagtcttctcccttcggtggatcatctcacgccaagggtattgtgttggaaaagattggtgttgaatccaaacagcccaactctgccattagaaagtgtgtcagagttcaattgattaagaacggtaagaaggtgactgctttcgtccctaacgatggttgtttgaactttgttgacgaaaacgacgaggtcttgttggctggtttcggtagaaagggtaaagctgtgggtgatattccaggtgttagattcaaggtcgtcaaggtctctggtgtgtccttgttggctttgtggaaggaaaagaaggaaaagccaagatcctaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]