2024-04-20 07:26:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_003025663 2982 bp mRNA linear PLN 13-NOV-2023 DEFINITION Trichophyton verrucosum HKI 0517 RNA interference and gene silencing protein (Qde2), putative (TRV_00123), partial mRNA. ACCESSION XM_003025663 VERSION XM_003025663.1 DBLINK BioProject: PRJNA51485 BioSample: SAMN02953766 KEYWORDS RefSeq. SOURCE Trichophyton verrucosum HKI 0517 ORGANISM Trichophyton verrucosum HKI 0517 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton. REFERENCE 1 (bases 1 to 2982) AUTHORS Burmester,A., Shelest,E., Gloeckner,G., Heddergott,C., Schindler,S., Staib,P., Felder,M., Petzold,A., Szafranski,K., Monod,M., Winkler,R., Kniemeyer,O., Schroeckh,V., Hertweck,C., Platzer,M., Guthke,R., Heitman,J., Wostemeyer,J., Zipfel,P.F. and Brakhage,A.A. CONSRTM Arthroderma Genome Sequencing Consortium TITLE Dermatophyte fungi deploy unique virulence strategies to cause cutaneous infection JOURNAL Unpublished REFERENCE 2 (bases 1 to 2982) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2982) AUTHORS Burmester,A., Shelest,E., Gloeckner,G., Heddergott,C., Schindler,S., Staib,P., Felder,M., Petzold,A., Szafranski,K., Monod,M., Winkler,R., Kniemeyer,O., Schroeckh,V., Hertweck,C., Platzer,M., Guthke,R., Heitman,J., Wostemeyer,J., Zipfel,P.F. and Brakhage,A.A. CONSRTM Arthroderma Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (04-SEP-2009) Leibniz Institute for Natural Product Research and Infection Biology - Hans Knoell Institute (HKI), Beutenbergstrasse 11a, Jena 07743, Germany COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_003315632). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2982 /organism="Trichophyton verrucosum HKI 0517" /mol_type="mRNA" /strain="HKI 0517" /db_xref="taxon:663202" /chromosome="Unknown" gene <1..>2982 /locus_tag="TRV_00123" /db_xref="GeneID:9581952" CDS 1..2982 /locus_tag="TRV_00123" /codon_start=1 /product="RNA interference and gene silencing protein (Qde2), putative" /protein_id="XP_003025709.1" /db_xref="GeneID:9581952" /translation="
MSERGGYRGRGRGGGDRGDRGGSRGRGGGGRGGRGGRGGGDFDGGRGRATFTGGRGGRGGGGRGRGGSPSIYGEGHPVPPPDAEVQKIEDTYIKQRKGLSLDTLKLSQAFPLRPAYGTRGNPVVLWANYFPLVPQTGITLYRYTVNVGVEGKQPPGYRKLKRIFEILLEDHLSAFQGHIATDFKATLISTTSLDLTSESLEVAYRDEFDAVAEPNAPRYPLRIVEIAPLVLDELLKFLKSPGADAFGQSKEEYLQALNIVTGHFPKISLDTFNVGPNKHFKTKTKDIFDLGGGLNAYRGYFVSTRAATSRLLVNVQVKHTTCFYDGPLVNLMTSTHNLFGLKQMNNLLKGVKISVTHLPPKTNKKGESVNRTKTILGLATAKDGASCEFPPKVEHSGAGPADVQFYISGSEHFETGYHSVYDYFKVRYKIELDMRSPVVNIGTMANPSYLPAEVCIIEPGQSIRSKLSPAQTQKMISFAVRRPKENAEAIVNHGAQIIGATLQPQATDTMGISFTPKLITVPGRVLSNPSVRYKGQGVAAIRSGSWNLNNLTFRVPGAPLKDWAYVMIGDGHIPSDPDRAVTDFINTARAQGLTLSPPLKAGGNTDGLAWVVNYRDPGNVEKNVDEMFRRIKSNANLKNARLLLVILPNDNPTVYKRIKLNGEVFHGIQTVCVIMSKFTKSSNVQYHANVAMKFNLKLGGTNHVLDDSKMGIIAGGKTMVVGIDVTHPAPGSSETAPSVAGMVASIDKTLGQWPAILRLQREAKQEMVDDLTDMLKSRLRLWHKKNGVYPENILVYRDGVSEGQYGKVLHEEHPRLLRACKELYTGGVTAKLPRMTIIVVGKRHNTRFYPTKAEDSEKDNARCGTVVDRGVTETRNWDFFLQAHTALQGTARPAHYYVVLDEIFSRRQNPAYPTVADELEDLTHNMCYLFARATKAVSICPPAYYADLVCERARAYLNYFYDENLSQKSGSASVASAKHLQPHPNVIDTMFYM"
misc_feature 229..2976 /locus_tag="TRV_00123" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1522..2871 /locus_tag="TRV_00123" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1963..1965,1975..1977,2011..2022,2029..2031, 2056..2058,2065..2067,2077..2079,2089..2091) /locus_tag="TRV_00123" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2170..2172,2176..2178,2392..2394,2839..2841) /locus_tag="TRV_00123" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtctgaacgcggtggttaccgaggccgcggccgtggtggcggagatcgtggtgaccgtggaggaagtcggggccgcggtggcggtggccgtggtggtcgtggtggtcgcggcggaggagacttcgatggcggacgtggccgtgcaaccttcactggcggcagaggaggacgcggtggaggaggtcgtggacgcggtggttctccaagcatctatggcgaaggccatcctgttcctccaccagatgccgaggttcaaaagatcgaggatacctacatcaaacaacgcaaagggttgagccttgacactctcaagctctcccaggctttccccctgagaccggcctatggtacgcgtggtaaccccgtggttctctgggcaaactacttcccactggtccctcagacaggcatcactctgtaccgctacaccgtcaatgtcggggtcgagggcaagcagccacctggctaccggaaacttaagcggatctttgaaattctgctggaagaccatttgtctgccttccaaggtcacatagccactgattttaaggccaccttgatctcgaccacctccttggatttgacgtctgagtcgctcgaggttgcatatcgggatgaatttgacgccgttgctgagccgaatgcccccagatacccgctccgtatcgttgaaatcgccccgttggtcttggatgagcttctcaagttcctcaagtccccaggagccgatgcattcggccagagcaaggaagaatacctccaggccctcaacatcgtcaccggccacttccccaagatctcccttgatacctttaatgttggccctaacaaacatttcaagacgaaaacgaaggacatttttgatcttggaggaggtctcaatgcttaccggggctattttgtcagcactcgagctgcgacgtctcgtctcctggtcaatgtgcaagtcaagcacacgacttgcttttacgacggacccttggtcaatctgatgacgagcacacacaacttattcggtctgaagcaaatgaacaacttgctcaagggcgtcaaaatctcggtcacccatcttccaccaaagaccaataaaaagggcgagagcgtcaatcgcacaaagactattctcgggcttgctaccgctaaggacggtgcaagctgtgaattcccaccaaaagttgaacactcgggcgctggaccagctgatgtccagttttacatttcaggaagtgagcacttcgaaaccggctaccattctgtttatgactactttaaagtccgttataaaatcgagctggacatgcgttctcctgtggttaatatcggcacgatggccaaccccagctatcttcctgctgaggtctgcataattgagccaggccagtcaatcagatccaagcttagccctgctcagacccaaaagatgatttcttttgccgttagacgtccaaaggaaaatgctgaggccatcgtcaaccacggggcccaaattatcggtgcaaccctccagcctcaagccacagacaccatgggcatctcctttacccccaagctgatcacggttccgggacgcgtcttgagcaacccttctgttcgttataagggtcagggtgtggctgccatccgctctggtagttggaacctcaacaatttaacctttagagttcctggcgctcccttgaaggattgggcgtatgtcatgattggagatggccacatcccttctgatccagatcgcgccgtcacggactttatcaacaccgccagggcacaaggcttaaccttgtcacctccactgaaggctggcggaaacactgatggtctcgcgtgggtggtgaattacagagaccccggcaatgtcgagaagaacgtggatgagatgtttagacgaatcaagtcaaatgccaatctcaagaacgcgagactactgttagttatccttccaaatgataacccgacagtatacaaacggatcaagctcaatggcgaggtcttccatggcattcaaaccgtctgtgtcatcatgtcgaagtttaccaagtcgagcaatgtgcagtaccatgccaacgttgccatgaagttcaatttgaaactcggaggtacaaaccatgtccttgatgattccaaaatgggaatcatcgcaggtggcaagacgatggttgttggcattgatgtcactcaccctgctccaggatcatctgagactgcccctagtgttgctggcatggttgccagtattgacaaaaccctcggccaatggccagcaattctgagattgcagcgtgaggctaagcaagagatggtcgatgatctcactgacatgctcaagtcccgccttcgcctttggcataagaagaatggcgtgtaccctgagaacatccttgtctaccgtgacggtgtctcggagggtcagtacggcaaggtcctgcatgaagagcatccccgcctactcagggcctgcaaggaactttacaccggcggagtaaccgcgaagctgcctcgaatgactatcatcgttgttgggaaacggcacaacactcgtttctacccaaccaaggccgaagattccgagaaggacaatgctcgctgtggcactgttgttgaccgcggtgtcaccgaaactcgtaactgggacttcttcctacaggcccataccgcccttcaaggaactgctcgtcctgcgcattactatgttgtcctcgacgagattttctcccgccgccagaacccggcatatccaaccgtcgctgacgagcttgaagatctcactcacaacatgtgttacctcttcgctcgtgccaccaaggctgtcagcatctgcccaccggcgtactatgccgatcttgtttgcgagagagcaagagcttatctcaactacttttacgacgagaaccttagccagaagtctggatcggcctctgttgcttccgcaaaacatctccagcctcaccccaacgttattgataccatgttctacatgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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