LOCUS       NR_200179               4680 bp    RNA     linear   PRI 25-SEP-2025
DEFINITION  Homo sapiens chromosome 1 putative open reading frame 220
            (C1orf220), transcript variant 3, long non-coding RNA.
ACCESSION   NR_200179
VERSION     NR_200179.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Huttlin,E.L., Ting,L., Bruckner,R.J., Gebreab,F., Gygi,M.P.,
            Szpyt,J., Tam,S., Zarraga,G., Colby,G., Baltier,K., Dong,R.,
            Guarani,V., Vaites,L.P., Ordureau,A., Rad,R., Erickson,B.K.,
            Wuhr,M., Chick,J., Zhai,B., Kolippakkam,D., Mintseris,J.,
            Obar,R.A., Harris,T., Artavanis-Tsakonas,S., Sowa,M.E., De
            Camilli,P., Paulo,J.A., Harper,J.W. and Gygi,S.P.
  TITLE     The BioPlex Network: A Systematic Exploration of the Human
            Interactome
  JOURNAL   Cell 162 (2), 425-440 (2015)
   PUBMED   26186194
REFERENCE   2  (bases 1 to 4680)
  AUTHORS   Willer,C.J., Schmidt,E.M., Sengupta,S., Peloso,G.M., Gustafsson,S.,
            Kanoni,S., Ganna,A., Chen,J., Buchkovich,M.L., Mora,S.,
            Beckmann,J.S., Bragg-Gresham,J.L., Chang,H.Y., Demirkan,A., Den
            Hertog,H.M., Do,R., Donnelly,L.A., Ehret,G.B., Esko,T.,
            Feitosa,M.F., Ferreira,T., Fischer,K., Fontanillas,P., Fraser,R.M.,
            Freitag,D.F., Gurdasani,D., Heikkila,K., Hypponen,E., Isaacs,A.,
            Jackson,A.U., Johansson,A., Johnson,T., Kaakinen,M., Kettunen,J.,
            Kleber,M.E., Li,X., Luan,J., Lyytikainen,L.P., Magnusson,P.K.E.,
            Mangino,M., Mihailov,E., Montasser,M.E., Muller-Nurasyid,M.,
            Nolte,I.M., O'Connell,J.R., Palmer,C.D., Perola,M., Petersen,A.K.,
            Sanna,S., Saxena,R., Service,S.K., Shah,S., Shungin,D., Sidore,C.,
            Song,C., Strawbridge,R.J., Surakka,I., Tanaka,T., Teslovich,T.M.,
            Thorleifsson,G., Van den Herik,E.G., Voight,B.F., Volcik,K.A.,
            Waite,L.L., Wong,A., Wu,Y., Zhang,W., Absher,D., Asiki,G.,
            Barroso,I., Been,L.F., Bolton,J.L., Bonnycastle,L.L., Brambilla,P.,
            Burnett,M.S., Cesana,G., Dimitriou,M., Doney,A.S.F., Doring,A.,
            Elliott,P., Epstein,S.E., Ingi Eyjolfsson,G., Gigante,B.,
            Goodarzi,M.O., Grallert,H., Gravito,M.L., Groves,C.J., Hallmans,G.,
            Hartikainen,A.L., Hayward,C., Hernandez,D., Hicks,A.A., Holm,H.,
            Hung,Y.J., Illig,T., Jones,M.R., Kaleebu,P., Kastelein,J.J.P.,
            Khaw,K.T., Kim,E., Klopp,N., Komulainen,P., Kumari,M.,
            Langenberg,C., Lehtimaki,T., Lin,S.Y., Lindstrom,J., Loos,R.J.F.,
            Mach,F., McArdle,W.L., Meisinger,C., Mitchell,B.D., Muller,G.,
            Nagaraja,R., Narisu,N., Nieminen,T.V.M., Nsubuga,R.N., Olafsson,I.,
            Ong,K.K., Palotie,A., Papamarkou,T., Pomilla,C., Pouta,A.,
            Rader,D.J., Reilly,M.P., Ridker,P.M., Rivadeneira,F., Rudan,I.,
            Ruokonen,A., Samani,N., Scharnagl,H., Seeley,J., Silander,K.,
            Stancakova,A., Stirrups,K., Swift,A.J., Tiret,L.,
            Uitterlinden,A.G., van Pelt,L.J., Vedantam,S., Wainwright,N.,
            Wijmenga,C., Wild,S.H., Willemsen,G., Wilsgaard,T., Wilson,J.F.,
            Young,E.H., Zhao,J.H., Adair,L.S., Arveiler,D., Assimes,T.L.,
            Bandinelli,S., Bennett,F., Bochud,M., Boehm,B.O., Boomsma,D.I.,
            Borecki,I.B., Bornstein,S.R., Bovet,P., Burnier,M., Campbell,H.,
            Chakravarti,A., Chambers,J.C., Chen,Y.I., Collins,F.S.,
            Cooper,R.S., Danesh,J., Dedoussis,G., de Faire,U., Feranil,A.B.,
            Ferrieres,J., Ferrucci,L., Freimer,N.B., Gieger,C., Groop,L.C.,
            Gudnason,V., Gyllensten,U., Hamsten,A., Harris,T.B., Hingorani,A.,
            Hirschhorn,J.N., Hofman,A., Hovingh,G.K., Hsiung,C.A.,
            Humphries,S.E., Hunt,S.C., Hveem,K., Iribarren,C., Jarvelin,M.R.,
            Jula,A., Kahonen,M., Kaprio,J., Kesaniemi,A., Kivimaki,M.,
            Kooner,J.S., Koudstaal,P.J., Krauss,R.M., Kuh,D., Kuusisto,J.,
            Kyvik,K.O., Laakso,M., Lakka,T.A., Lind,L., Lindgren,C.M.,
            Martin,N.G., Marz,W., McCarthy,M.I., McKenzie,C.A., Meneton,P.,
            Metspalu,A., Moilanen,L., Morris,A.D., Munroe,P.B., Njolstad,I.,
            Pedersen,N.L., Power,C., Pramstaller,P.P., Price,J.F., Psaty,B.M.,
            Quertermous,T., Rauramaa,R., Saleheen,D., Salomaa,V.,
            Sanghera,D.K., Saramies,J., Schwarz,P.E.H., Sheu,W.H.,
            Shuldiner,A.R., Siegbahn,A., Spector,T.D., Stefansson,K.,
            Strachan,D.P., Tayo,B.O., Tremoli,E., Tuomilehto,J., Uusitupa,M.,
            van Duijn,C.M., Vollenweider,P., Wallentin,L., Wareham,N.J.,
            Whitfield,J.B., Wolffenbuttel,B.H.R., Ordovas,J.M., Boerwinkle,E.,
            Palmer,C.N.A., Thorsteinsdottir,U., Chasman,D.I., Rotter,J.I.,
            Franks,P.W., Ripatti,S., Cupples,L.A., Sandhu,M.S., Rich,S.S.,
            Boehnke,M., Deloukas,P., Kathiresan,S., Mohlke,K.L., Ingelsson,E.
            and Abecasis,G.R.
  CONSRTM   Global Lipids Genetics Consortium
  TITLE     Discovery and refinement of loci associated with lipid levels
  JOURNAL   Nat Genet 45 (11), 1274-1283 (2013)
   PUBMED   24097068
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL513013.12.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA1965299, SAMEA1968540
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               AL513013.12        47361-47473
            114-1142            AL513013.12        49463-50491
            1143-1212           AL513013.12        51682-51751
            1213-4680           AL513013.12        52864-56331
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1q25.2"
     gene            1..4680
                     /gene="C1orf220"
                     /note="chromosome 1 putative open reading frame 220"
                     /db_xref="GeneID:400798"
                     /db_xref="HGNC:HGNC:33805"
     ncRNA           1..4680
                     /ncRNA_class="lncRNA"
                     /gene="C1orf220"
                     /product="chromosome 1 putative open reading frame 220,
                     transcript variant 3"
                     /db_xref="GeneID:400798"
                     /db_xref="HGNC:HGNC:33805"
     exon            1..113
                     /gene="C1orf220"
                     /inference="alignment:Splign:2.1.0"
     exon            114..1142
                     /gene="C1orf220"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1212
                     /gene="C1orf220"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..4680
                     /gene="C1orf220"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1517..1522
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C1orf220"
                     /note="hexamer: AATAAA"
     polyA_site      1539
                     /gene="C1orf220"
     regulatory      4660..4665
                     /regulatory_class="polyA_signal_sequence"
                     /gene="C1orf220"
                     /note="hexamer: AATAAA"
     polyA_site      4680
                     /gene="C1orf220"
                     /note="major polyA site"
ORIGIN      

agccaccgcctcttctcggcttcctcttgctttacagtaactctcctcctggggaaaaggcttttcacggagcaggctcggagcctacggggctggcctcggactggatggggcaaatacagcctatgctcagaatttctccgacttcccatctctgagatgccggatgcccagttccacagaatcatggcaagcgagaaactgtcgttcataagagttcaagaaaatgaatattctctcaactctgtgagggccagtgggttccaggcgagatgagacaacttggtgagcgtcgtaactgagctcccaatgcatttagaagcctctggatggccggggggtgcattccagctgtgctggaaaaattatattttgaagttaaatctggtagtgttttttccaatatgaataggcctcaggaaagagataatacatttccttctttgttcagagggtgctcaacttgctggagtcatctctgctatggctttatttgccaacaacagagaacttgctctgcagcagccccaggctctctggggaccccacaggctatgcagatcccccaccccagaaccacagaaggagacagagcagaagcacaccccgtcttccaggcccaggacagctgctgagctccaggacacggactcttgaaggttgattttgactacttactaagctccagctgaaccagttccacttctttaaccttcccatgatccctgtgaggggtctgtggtattgctatttgcaagtaaagaaagtgagattgagggaggctgaaagacttggccccaagtcacaatgccctgctgaatgtggtgctgcctcctggatatcctgggtgcttcaacatcaacagctcttggcaagtgagtgggccacgaaggatggacgagggacatgggggagcaagcccagctgcacggttccagctctttccgccacatcacagcttctgcagttgggaagactgaacagtgatcttcagtttgttcgtcaaagggccaagaaatctgtgtcctcaccttctctgcttcaattctggtgctgcttaagccgattatcatttcatgccctaaaccaaaaaataaactctacaaacatcaacattacataggacaggatctggcccacagattgggggcaggagctgctttttcaatgagaagaatgaacagacctagtgggcgttgcctttagacccaggatgtaaaaggtaatgccagcagacgttggcagtgctggagacacctggtgggcagaggttacctggctggagtggcaggtgtgaggagatgcctcccagcataaggaatgtgggcttctgttggatctcttgttccaggcctcacacatgttcaaggcagcctgggtatgtcttggcccattcaatccctcaaagccctgtttaattctcatcttgctgtcacctatgtggtgccaagaaacaagtcaccaaaataatgaaatgcctacctaagcttaaaaacaaaaccatgaggtctttctaaataaattatgaaaaagtgcaaactgcaggtccctgtaatgatttcaaagactccgttccaacaatgcattaatttaaaaagggagtataaggcaaaggggggtgattagaagaggaaggcagctgacatcaaactgaatataccaagtttcctcctcaaaaacgagtgtgcattatttgtggtgaccattcttggtattgttctattacgtaaaacacagcatagcatcattcttttagatgccattcatttaatatatgggcaaatgtacatggttaggctagactggagcacttgtctacactgcttaaaagaaaagatttactaaaaaaattcaaaggacaaacgaaagtgcaaagggaatgttaggtttaattaagaaatcagctctttaaagggcttaaccagaataattgttggtatgcaagtggggttgtgaattataaatgaatcattcattctttgaagaatgatctcttcttggaaaaggatctcttcttggaaagacttggggagcattttaagttgttgaaggccaggtgtggtggctcatgcctgtaattgcagaactttgggaggccaaggtgggtggattacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcatgcgcctgtaatcccaactgcttaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccatgatcgtgccactgcccttcagcctaggtggcagatactaataattactgagtcgttttaagtcggtaacatttgttaggtgtttattacatgctagttcctcagttccaagtatttagtcttcaccacaggcctaggattatgaccattttatagaggaggaaaatgaaggcctccaagtgccttgcctgaattacctagctaaatgctaggaaagcaaagacaagtacaacaggctgtctgcctttaagaagtttaccacctagtattttttaatgtaaattctctaataagttcaggccagcttcctcttccagctcatctgaatttggtgaatttcaataaaataaaacaatacgaaaaacgtttctacgcaattaactgttgtcatgtattataataggaataagggggaaagccgtcttatggaatattgagtccacacttgagaatcaattgcctgaagaacattcttatttccagattgtagcatggtctttttatgcctgaacaatgacaaaaagagtgatgattttgtaacaaaacctcagggacgcaattaacaagttgtcatttctaattcatgtggaaatgctgttttatttttcagagaattgtagcagtggtgttcatttaattaagaatctgatgttgcggaagggcaattgagtgaaatttataatattgtagacagacatgtatgcaaacacaaaagaaaattggttaaggatctaagtgccagcttattttcctttgaacagcccatttttacatgatttgtgagctgtttcataaaggaatcatataagtatattttatccttttaaagatattttacggtaaactcatctaactagtaattgtacaaggctcataaatagtcaaaaagaaaagtgcctgtaacttttgacaatattgaaggtgactacctctgtattagaaggcagtttaggatctagtagctttcccaactgcaagtaatggcatattctaatttatatgaacaacatcataaaaccaataaggtaaagaaaataggtttgaatgagaaagtattctgagaaaggtggggaatgggcgtcagatatggattggaaggagacaagagatcggaaaggtgacagaagagagcccccactgtggtggctactgcctgcaccttcaccaggaagtgttgctcacctgtccaagccacaagttctggtcatgtcgtagatccaagtgcctccaggtggatgtgccacttccaaggcccagccttcctaagccacctcaccttaaggtctggatacatttgttcacagtatgcactttttgagtgctaattatgtgccaggcactgggctaggtcctggggacacacccatgaacaaggagagcaggttcctggcctcttgcagctgacattctagtcagaggagacagtctgtaaacacatagataaataattgaaagagttgcacatggcgatttgcgctgagaaaataaagcaaggtaaagagatttaagtgtgagagaagaaaaggggctgtttaaagaggtggttagggaaggcctctctgaggtcaggacatctgagcagcgaaggagccagcgatgggaagcaccgggggcgggggtaggacactccagacggagcaagtacaaaggccctggggcaggaaggaccctgatgtgctggatgaggagcaagagggtgccagtatcgctgagctggagaagaggaagaaaagtgggagaggaagatgaagaagtcacagaggtcaggccatgtgggccttttaggcatggccaaatgcttggattctcttccaaggagaatgggaagtcattggaagatcttaagtagggacatgataagactgatttatactttccaattattactgtgactactctgtggggaccagattataggaagatgataataaggtgagtgaaaagagtggccagtcgtggcatccgcctccttccacagagatgagtacaggctgaagtcttgtccgtaagatgcttctgtggaagttacagggagctgaccctggccttggaactaactgtggtgggatcagagaggggggaagcagagatggtgccagctttggcccaaagatcagaagcagtaaggactctgtgcctctggcaaaaggacaactccatgttttctgtgcaaacatccaagttaccatttccccaggcgacattgcagctgtggggcctgtgaacaggacaacagctaaccattctgagtttaaaaaaatcaaggacagtaccctcatgtttataatatagggggcaaagcaaaatccattgacaagcatttcctttaaaatacagggaaggaagattccattgtctacaaattctaatggaaattaataaagatgagcaaatatca

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