LOCUS       NM_214121                915 bp    mRNA    linear   MAM 16-FEB-2022
DEFINITION  Sus scrofa mesenchyme homeobox 2 (MEOX2), mRNA.
ACCESSION   NM_214121
VERSION     NM_214121.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D,
            Hamasima N and Awata T.
  TITLE     PEDE (Pig EST Data Explorer) has been expanded into Pig Expression
            Data Explorer, including 10 147 porcine full-length cDNA sequences
  JOURNAL   Nucleic Acids Res. 35 (Database issue), D650-D653 (2007)
   PUBMED   17145712
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H,
            Okumura N, Hamasima N and Awata T.
  TITLE     PEDE (Pig EST Data Explorer): construction of a database for ESTs
            derived from porcine full-length cDNA libraries
  JOURNAL   Nucleic Acids Res. 32 (Database issue), D484-D488 (2004)
   PUBMED   14681463
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF295686.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF295686.1, SRR5275321.236167.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103886127, SAMEA103886166
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="9"
                     /map="9"
     gene            1..915
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="mesenchyme homeobox 2"
                     /db_xref="GeneID:397222"
                     /db_xref="VGNC:VGNC:90142"
     exon            1..517
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /inference="alignment:Splign:2.1.0"
     CDS             4..915
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="growth arrest homeobox transcription factor GAX"
                     /codon_start=1
                     /product="homeobox protein MOX-2"
                     /protein_id="NP_999286.1"
                     /db_xref="GeneID:397222"
                     /db_xref="VGNC:VGNC:90142"
                     /translation="

MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACPPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYELAVNLDLTERQVKVWLQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDPLANEDSHDSDHSSEHAHL"

     misc_feature    478..852
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(562..576,580..582,631..633,649..651,688..690,
                     694..699,706..711,715..723,727..732)
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(568..570,577..579,697..699,706..711,718..720)
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    571..729
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            518..690
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /inference="alignment:Splign:2.1.0"
     exon            691..915
                     /gene="MEOX2"
                     /gene_synonym="GAX"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gctatggaacacccgctctttggctgtctgcgcagccctcacgccaccgcgcaaggcttgcacccgttctcccagtcctctctcgccctccatggaagatctgaccatatgtcctaccctgagctctccacttcttcctcgtcttgcataatcgcgggataccccaacgaggagggcatgtttgccagccagcatcacagggggcaccaccaccaccatcaccatcaccaccatcaccaccagcagcagcagcaccaagctctgcaaaccaactggcacctcccgcagatgtcctcccccccgagtgcggctcggcacagcctctgcctccagccggactcgggagggcccccggagctgggaagcagtccaccggtcctgtgttccaactcttccagcttgggctccagcaccccgaccggggccgcgtgcccgccaggggactacggccgtcaggcgttgtcacccgcggaggcggagaagagaagcgggggcaagaggaaaagcgatagctcagactcccaggaaggaaattacaagtcagaagtcaatagcaaacccaggaaggaaaggacagcttttactaaagagcaaatcagagaacttgaagcagaatttgcccatcataattatctgaccagactgaggcgatatgaactagcagtgaacttggatctcactgaaagacaggtgaaagtctggctccaaaacaggcgaatgaagtggaagagagtaaaaggaggacagcaaggagctgcggctcgagaaaaggaactggtgaatgtgaaaaaggggacacttctcccttcagagctctcgggaattggtgcagccactctccagcaaacaggggaccctctagcaaatgaagacagccatgacagtgatcacagctcagagcacgcccacctctga

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