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2024-03-29 08:03:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_204512                954 bp    mRNA    linear   VRT 10-NOV-2023
DEFINITION  Gallus gallus brain specific homeobox (BSX), mRNA.
ACCESSION   NM_204512
VERSION     NM_204512.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY500594.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY500594.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03579563, SAMN08016555
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
     gene            1..954
                     /gene="BSX"
                     /note="brain specific homeobox"
                     /db_xref="CGNC:4913"
                     /db_xref="GeneID:395183"
     exon            1..343
                     /gene="BSX"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..777
                     /gene="BSX"
                     /note="brain-specific homeodomain protein"
                     /codon_start=1
                     /product="brain-specific homeobox protein homolog"
                     /protein_id="NP_989843.1"
                     /db_xref="CGNC:4913"
                     /db_xref="GeneID:395183"
                     /translation="
MNLNFTSPVHPVPAPRPTSFFIEDILLHKPKPLREVPPEHFAGSLASRVPLLDYGYPLMPAPALLAPHPHPALHKPEHHHHHPYFLTTSGVPVPALFPHHAHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDDPIHEENREQSSPEPELPEPAAAEPRKGPPGPFLLQDPEDEVDILEEGDILAAPHRL"
     misc_feature    order(412..426,430..432,481..483,499..501,538..540,
                     544..549,556..561,565..573,577..582)
                     /gene="BSX"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(418..420,427..429,547..549,556..561,568..570)
                     /gene="BSX"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    421..579
                     /gene="BSX"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    565..729
                     /gene="BSX"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6RFL5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            344..540
                     /gene="BSX"
                     /inference="alignment:Splign:2.1.0"
     exon            541..954
                     /gene="BSX"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gccggccgccctttctcctccggcccccagccccgctcgctccgttccccgcaatccgacgcggggccctccgagatgaacctcaacttcacctctccggtacacccggtccccgcgccccgacccacctccttcttcatcgaggacatcctgctgcacaagcccaagcccctgcgggaggtgccccccgagcacttcgccggctccttggcatcccgcgtcccgctcttggactatgggtaccccctgatgcccgccccggcgctgctggctccacacccgcacccggccctgcataaaccggagcaccaccaccaccacccctacttcctcaccacctcgggagtgccggtgccggcgctgttcccgcaccacgctcacgccgagctgcccgggaagcactgccgccgccgcaaggcccgcaccgtcttctccgactctcagctctccggtctggagaagcgcttcgagatccagcgctatctctccacgccagagcgggtggagttggccacggcgctcagcctctccgagacgcaggtgaaaacctggttccagaaccggcggatgaaacacaaaaaacagctgcggaaaagccaggacgaccccatacacgaagagaaccgcgagcagagctcccccgagcccgagctccccgagccggccgcagccgagccccgaaagggcccccccggccccttcttgctgcaggaccccgaggacgaggtggacatcctggaggagggggatatcctcgccgccccacaccgcctttaggagctctcagggcagctttgcgcagccccgcatctctcccccagccccgcgtgctgccggggtgccgaggtttggtgtcggtacggaggggaacaaaacccccgggctcctttcgcccctttggctgcatcccagcgtcaccccaagcctgaactttgcttggaaatccagcggggg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]