2024-03-29 10:31:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_203620 1505 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis NK2 homeobox 8 (nkx2-8), mRNA. ACCESSION NM_203620 VERSION NM_203620.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 1505) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC061321.1. ##Evidence-Data-START## Transcript exon combination :: BC061321.1, CF224313.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00862007 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1505 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="8" /map="8" gene 1..1505 /gene="nkx2-8" /gene_synonym="nkx2-9; nkx2.8; nkx2h" /note="NK2 homeobox 8" /db_xref="GeneID:394548" /db_xref="Xenbase:XB-GENE-853981" misc_feature 42..44 /gene="nkx2-8" /gene_synonym="nkx2-9; nkx2.8; nkx2h" /note="upstream in-frame stop codon" CDS 126..758 /gene="nkx2-8" /gene_synonym="nkx2-9; nkx2.8; nkx2h" /note="NK2 transcription factor related, locus 8" /codon_start=1 /product="homeobox protein Nkx-2.8" /protein_id="NP_988951.1" /db_xref="GeneID:394548" /db_xref="Xenbase:XB-GENE-853981" /translation="
MSSGGLSFTVRRILGLPEFDSTAIQNDSPLNYTSRTPYQDWLDNERNHFLSSDDSGSETNSPDTTQRSEVGSDSAETEEKKKKKRRVLFSKAQTLELERRFRQQRYLSAPERDQLAHILHLTPTQVKIWFQNHRYKMKRVKPEASSTPPLLKRVMVPVLVRDGKPCQTCPSSPHSERESIQVLPTLHYNFFQGYPHHQQVAHPSSFSWRW"
misc_feature 390..539 /gene="nkx2-8" /gene_synonym="nkx2-9; nkx2.8; nkx2h" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cttcactgtggaaaggagcagctctctgagagccagctttataggccactagcttcagcactgacaagggcttacagttccaccaacttcttgcctctgcttggggaacgacctgcagcacagagatgtcttctggagggttaagcttcactgtccggaggattttgggtcttccagaatttgacagcacagccatacagaacgattcacccttaaattacaccagtaggaccccatatcaagactggttggataatgagcgaaaccactttctctcctcggatgacagtgggtcggagaccaactccccagacactacacagagatcagaagtgggatctgacagtgcagagacagaggagaagaagaagaaaaagcggagagtccttttctcaaaagctcagactttggaactggagagaaggtttcgccagcagcgctacctatcggctccagaaagggaccagttggctcacattctgcacctcactcccactcaggtcaaaatctggttccaaaaccaccgctacaagatgaaaagggtcaagcccgaagccagcagcacaccccctcttctcaaaagggtcatggttccagttctggtgagggatggcaagccatgtcagacctgcccttcttccccacattcagaaagggaaagtatccaagtgcttcccactttgcactacaactttttccaaggttatcctcatcatcaacaggtagcccacccttcaagtttctcctggagatggtgactggactgctaactcctatcttgagtttacaaaggaatggacaccttgaggaagggaattgccgaaacgtagctgacttttgacagcaatagaaacccaaaacagccatagccagacctctgtgggctatacaaatgtagcactccagtactttgtttcttaaactggtaatataacaaagcaacagctctggatatttccctcagaagagtgaatggtatcccagactgatggtgcataattatatgtgtatttgtgtacatgtacagtatatatatatatatatatctatgggattttattttatgatattttctcatttgtgttatggatgtactgaatccactattttggaatttggctgaaccctgaatcctttatgaaagatttggccgaataccaaaccgaatccgagttcgtatacgcaaataagatcagtgttaaggagaaccctttgcacgcagtaaaaaaaattcatcatcagtgtttatgtgacaaaacatagattaggccaaatctggattctgctggaaaaggacgaatattagccaaatcctaaactgaatcctggattcggtgcatccctaatttgtatataattttttttttttttaaattgtaaaatatttcaatttaggcttcattagctatgtacagaaagaatgttttgctgatggatttaataaatggatttaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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