LOCUS       NM_203517               1605 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis Mix paired homeobox (mix1), mRNA.
ACCESSION   NM_203517
VERSION     NM_203517.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   D'Souza A, Lee M, Taverner N, Mason J, Carruthers S, Smith JC,
            Amaya E, Papalopulu N and Zorn AM.
  TITLE     Molecular components of the endoderm specification pathway in
            Xenopus tropicalis
  JOURNAL   Dev. Dyn. 226 (1), 118-127 (2003)
   PUBMED   12508233
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY157638.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY157638.1, CR761453.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028293
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="5"
                     /map="5"
     gene            1..1605
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /note="Mix paired homeobox"
                     /db_xref="GeneID:394439"
                     /db_xref="Xenbase:XB-GENE-485898"
     exon            1..190
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /inference="alignment:Splign:2.0.8"
     CDS             61..1134
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /note="mix1 homeobox; paired-like homeodomain
                     transcription factor Mix; Mix paired-like homeobox"
                     /codon_start=1
                     /product="Mix paired homeobox"
                     /protein_id="NP_988848.1"
                     /db_xref="GeneID:394439"
                     /db_xref="Xenbase:XB-GENE-485898"
                     /translation="

MDSFSQQLEDFYPSGFSPSPLGFNETEVQPFAMKDFQQPPNRREVTMSPAGSEQSPVQNIRTKDTMGSKETDPRNPVPDASLLPASQRRKRTFFTQAQLDILEQFFQTNMYPDIHHREELARHIYIPESRIQVWFQNRRAKVRRQGAKATKPVLAGHHYSSTFGATRSMFPSAPAPNSSSHPMATARAQAQPMKDSQANKFHQSQGFLPYPDSSCDVSRQRFLLSQATPGTYHLPQTSSNIYNQNGKPHIPLWNQQPLYTDMMEKVLDLSRRPEQMPVQPMYSTQTHKNIKSVVHGSTTLSHHSHMSLFANQDPCNMPTTQGGTYGHVSPISDSGVSDTSPEPTSDWEENVCVLLHL"

     misc_feature    322..495
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(322..336,340..342,391..393,409..411,448..450,
                     454..459,466..471,475..483,487..492)
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(328..330,337..339,457..459,466..471,478..480)
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            191..456
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /inference="alignment:Splign:2.0.8"
     exon            457..1593
                     /gene="mix1"
                     /gene_synonym="mild1; mix; mix.1; mix.2; mix2; mixl;
                     mixl1; tMix"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      

cgcaccggtcactttgggagccacaagccttgggaacccaggaagcagccagtccctaggatggactcattcagccaacaactggaggacttctacccttctggcttctcccccagcccattgggcttcaatgagacagaggtccagccatttgccatgaaggacttccagcaaccgcccaataggagagaagtgactatgagcccagcagggagtgagcagagcccggtacagaacatcagaaccaaagacacaatgggctccaaagagaccgacccaagaaacccggtgcccgatgcctctttgctcccagcatctcagcgcaggaaaagaaccttcttcacccaggcccagttggatatcctagagcagttcttccaaaccaacatgtacccagacatccaccaccgggaggagctagcgaggcatatctacatccctgagtcccgcattcaggtctggttccagaacagaagagccaaggtcagacgtcaaggtgcaaaggccaccaagcccgttcttgccggccatcattattccagcaccttcggggctaccagatcgatgtttccttcagcccctgcccccaacagctcctcacacccaatggcaacagcccgggcacaggctcagcctatgaaagattcccaagcgaataagttccaccaaagccaggggttccttccctacccagactcatcttgtgatgtctctcggcagaggttcctcttgtcccaggcaacacccggtacctaccatctgccccagacatcatccaacatctacaatcagaatgggaaaccccatatccctctgtggaaccagcagccgctatatacagatatgatggagaaggtcttggacctgagcagaagacctgagcagatgccagtccagccaatgtacagcacccagacccacaagaacatcaaatcagtggtccacggttctaccactttaagccaccacagtcacatgagcctgtttgccaaccaagatccatgtaacatgccaacaacacagggcggaacctacggacacgtctctcctatctccgattccggggtcagcgacacctccccagaaccaacttccgactgggaagagaacgtctgtgtgctcctccacctttgaggcagttactgtatctgagtttggcaatgttctgccatagacatattggacttggactctggggtgggaatgtataagaagagttttgattggctaagacacttacagacattgcaatatttcttccagatcttcttttcttcttgttatggactcagatggataaaaatgttgacagttagtctatagatattctaggggtatctagcacattaccccaaatctaaccattgggctgctatcttctgacaatagggggcagcaccacagtttgggggacagagaacatgggcaatgggatagaggaattaatatgtatatttatttttgccttttttattagaagatatttatttttttactcctgttatagttccttctatgtaaataaactgtatctgcccatacactatatatctatgtatccgtggggcaataaaaacaatgggattgttctgaaaaaaaaaaaaa

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