GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 20:38:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001383215            2197 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-12),
            mRNA.
ACCESSION   NM_001383215
VERSION     NM_001383215.2
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 2197)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2197)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 2197)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003282).
            
            On Feb 2, 2021 this sequence version replaced NM_001383215.1.
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="IV"
     gene            1..2197
                     /gene="eri-12"
                     /locus_tag="CELE_B0001.6"
                     /db_xref="GeneID:178166"
                     /db_xref="WormBase:WBGene00007091"
     CDS             11..2035
                     /gene="eri-12"
                     /locus_tag="CELE_B0001.6"
                     /standard_name="B0001.6"
                     /note="Product from WormBase gene class eri;
                     Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Enhanced RNAI (RNA interference)"
                     /protein_id="NP_001369910.1"
                     /db_xref="EnsemblGenomes-Gn:WBGene00007091"
                     /db_xref="EnsemblGenomes-Tr:B0001.6.1"
                     /db_xref="EnsemblGenomes-Tr:B0001.6.2"
                     /db_xref="GeneID:178166"
                     /db_xref="GOA:Q17415"
                     /db_xref="UniProtKB/TrEMBL:Q17415"
                     /db_xref="WormBase:WBGene00007091"
                     /translation="
MSSQKSGIVVQSDETHILISSSHDIFVADPDQNTKLGDSVSFTTWDIANNLKRASDIKPRNQIVESVVYEQDQSLRLRLKILGFYDFTKSQQRVFRTDFITQVREGEKFKYLPKNAFFGRQITVKLTHQKNSIVWELDEFEEPKEKTYSLIGQIYYTDFSDAYVYVPGYPEPFVISKETNFSRSEEGTWVKFLACTATASVKKSEGFQFLEKDLLDTNRNREIAIKCSRKDGIIQSHHFEKVIDKDNRLADYGVLSDFENVLIYVKVSMEGVSKKPSLILGQFQTSFNVNPTLTRDQKEALDPPKRILKKQSSLPREGSSRKQVTQIQNLSRKIETGPRINFLPNFNNQDHGSEFFSDNEEMDLVPPLENSHLRVDPVPVPIEPSIQQNRTTTTAPISAPARRISSNESRRENPNSQPAPSKMQNVFREDPEAEYKRPERSNADNDETSSTISACSSKSRIVRENPDANYERPARRLPTPPLEANDNLEHQSHDSSSTDGLRDTSPVGNNTNPRSGSPSCHSDTHSSVSSSLWITTINSSKDLEFVKNEYIKLWIEDQASQKEMKNLKAKRIELKMKQKKLKAELNDEKMKNQKLEEAAFNDRKEKAELKKKVSNLEQSAQNTQRTLQNQTRELNLYSTNRSWLRKEFNSTNLLEHLRRNYHDLSKRLEQFAFN"
     misc_feature    <1142..>1585
                     /gene="eri-12"
                     /locus_tag="CELE_B0001.6"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); Region: Herpes_BLLF1; pfam05109"
                     /db_xref="CDD:282904"
     misc_feature    1676..>1912
                     /gene="eri-12"
                     /locus_tag="CELE_B0001.6"
                     /note="Outer membrane protein (OmpH-like); Region: OmpH;
                     smart00935"
                     /db_xref="CDD:214922"
ORIGIN      
tgtcaccgtcatgtcgtcgcaaaagtctggaattgtcgtgcaaagtgatgagacccatattctcatttcttcaagtcatgatatattcgtggcagatccagaccaaaatacaaagttgggcgattcggtttccttcacgacttgggacatcgccaacaatttgaaacgtgcctctgacatcaaaccacggaaccagattgttgaatccgttgtgtatgagcaagatcaatcattgaggctcagattgaagattttggggttttacgacttcaccaaatctcagcaaagagtttttagaactgacttcattacgcaagttcgagaaggagagaaattcaagtatcttccgaaaaacgcatttttcggaaggcagattacagtcaaactgacccaccagaaaaactcaattgtgtgggaacttgatgaattcgaagaacccaaagagaagacgtattcattaattggccagatttactacactgatttcagtgatgcatatgtctatgttccaggatatcctgaaccgtttgtaatatcgaaggaaactaacttcagccgatcagaagaaggcacatgggtcaagttcttagcctgtacggcgacagcttctgtgaagaaatcggaaggatttcaattcctggaaaaggatctattagataccaacaggaatagagaaattgccatcaaatgttcccgcaaagatggaatcatccaatcacatcattttgaaaaggttatcgataaggataacagattagctgattatggagttctctcggattttgaaaatgttctaatctatgtcaaggtttcaatggaaggtgtcagcaagaagccctcgctgattcttggacaatttcaaacgagtttcaacgtgaaccccacgctcacaagagatcaaaaagaagcactcgatcctccaaaaagaattctcaagaagcagtcttctcttccaagagaggggtcatcccgaaaacaagtcacacaaattcaaaacttgtcaagaaaaatcgaaaccgggccaagaatcaattttctccccaactttaataatcaggatcacggcagtgaattcttctcggacaatgaagaaatggatttggttccaccacttgagaattcccatcttcgagttgatccggttcctgttcctattgaaccgtcgattcaacaaaatcgaacgacaaccactgctccaatctcagcacccgcgagacgtatttcaagtaatgagtcaagacgagaaaatccaaattcacaaccagcaccttcaaaaatgcaaaacgttttccgagaagacccagaagctgagtataagcgtccagaaagaagcaatgctgataatgatgaaacttcaagcacgatatctgcgtgctcttcaaaaagccgcattgttcgtgagaatccagatgccaattatgaaaggcctgctcgtcggctcccaactcctcccttggaagcaaacgacaacttggagcatcaaagccatgattcatcatcgacagacggcttaagagacacttcacctgttggaaacaacacgaacccccgctcaggatcaccaagttgccactccgacacacattcaagcgtgtcaagttcattatggatcaccactatcaactcatcaaaagatttggaatttgttaaaaacgaatatatcaaactttggattgaagatcaggcttcacaaaaagaaatgaagaatctcaaggcaaagaggatcgaattgaaaatgaaacagaagaaattgaaagctgagctcaacgatgaaaagatgaagaatcagaaattggaagaggcagctttcaacgacagaaaagaaaaagctgagttgaaaaagaaagtctccaatttggaacaatctgcgcaaaacacccagagaactctgcaaaatcaaaccagagaattgaacttatatagtaccaacagatcctggctccgaaaagagtttaacagtactaacctcttggagcatctccgacgcaactaccacgacctttccaaaagattggaacaatttgcctttaattgaaaaaaatggcaagatacacataactcctgtaccagttatctgaaaaaagatgacttcatttactaattgaaactgaattttgatgctgtcaattcttgtaacattcattgattgtaactgaaatgtgaaaacattgctggataataaattcattgttaataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]