LOCUS       NM_001350108            3594 bp    mRNA    linear   PLN 03-SEP-2021
DEFINITION  Zea mays uncharacterized LOC100193970 (LOC100193970), mRNA.
ACCESSION   NM_001350108 XM_020541893
VERSION     NM_001350108.1
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J,
            Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes
            J, Walbot V and Yu Y.
  TITLE     Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs
  JOURNAL   PLoS Genet 5 (11), e1000740 (2009)
   PUBMED   19936069
REFERENCE   2  (bases 1 to 3594)
  AUTHORS   Vega-Arreguin JC, Ibarra-Laclette E, Jimenez-Moraila B, Martinez O,
            Vielle-Calzada JP, Herrera-Estrella L and Herrera-Estrella A.
  TITLE     Deep sampling of the Palomero maize transcriptome by a high
            throughput strategy of pyrosequencing
  JOURNAL   BMC Genomics 10, 299 (2009)
   PUBMED   19580677
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3594)
  AUTHORS   Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z,
            Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S,
            Chou H, Wing R, Soderlund C and Coe EH Jr.
  TITLE     Anchoring 9,371 maize expressed sequence tagged unigenes to the
            bacterial artificial chromosome contig map by two-dimensional
            overgo hybridization
  JOURNAL   Plant Physiol 134 (4), 1317-1326 (2004)
   PUBMED   15020742
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CABHLF010000006.1 and BT036371.1.
            
            On Apr 7, 2017 this sequence version replaced XM_020541893.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR12162136.1721725.1,
                                           SRR3147036.362.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00780084, SAMN00780085
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               CABHLF010000006.1  138437184-138437299
            117-944             CABHLF010000006.1  138438924-138439751
            945-1156            CABHLF010000006.1  138439831-138440042
            1157-1306           CABHLF010000006.1  138440115-138440264
            1307-1440           CABHLF010000006.1  138440349-138440482
            1441-1550           CABHLF010000006.1  138440669-138440778
            1551-1657           CABHLF010000006.1  138440862-138440968
            1658-1796           CABHLF010000006.1  138441061-138441199
            1797-1913           CABHLF010000006.1  138441336-138441452
            1914-2021           CABHLF010000006.1  138441707-138441814
            2022-2093           CABHLF010000006.1  138441914-138441985
            2094-2216           CABHLF010000006.1  138442375-138442497
            2217-2270           CABHLF010000006.1  138442585-138442638
            2271-3594           BT036371.1         1-1324
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /cultivar="B73"
                     /db_xref="taxon:4577"
                     /chromosome="8"
                     /map="8"
     gene            1..3594
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /note="uncharacterized LOC100193970"
                     /db_xref="GeneID:100193970"
     exon            1..116
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    75..77
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /note="upstream in-frame stop codon"
     exon            117..944
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..3455
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /codon_start=1
                     /product="Protein argonaute 1B"
                     /protein_id="NP_001337037.1"
                     /db_xref="GeneID:100193970"
                     /translation="

MVRKKRTGPGESSGESSGAPGHGSSQRPQATQQGTRGGGQHQGRGGYLGPGVPPSQHPGGGPPEYHQPLDYQGRGGYQGRGGPPSQHPGGGTPPGSQPRGYQGHGGYQGRGGPPSQYPGGGTPPGSQPRDYHGRGGPRPRGGMPQSYRGGHVGGSVVPSVPSGPSRPVPELHQAPDVQHQAPVVATPSSPGAGSSSQPGKAEVSAGQVQQQFQQLAIRNQSLASQAGQMAPASSKSVRFPLRPGKGTHGSRCIVKANHFFAELPNKDLHQYDVSITPEVTSRGVNRAVMAELVKLYRHSHLDGRLPAYDGRKSLYTAGALPFASKTFEITLQDEEDSLGGGQRRQRVFRVTIKFAARADLHHLAMFLAGRQPDAPQEALQVLDIVLREMPTAKYCPVGRSFYSPKLGRPQQLGEGLETWRGFYQSIRPTQMGLSLNIDMSSTAFFEALPVIDFVSQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTPQATRELSFPIDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNDKQITALLKVTCQRPQAREKDILETVYHNAYSKDPYAQEFGITIDERLASVEARVLPPPRLKYHDSGRERDVLPKIGQWNMMNKKMVNGGRVSSWACINFSRNVQDGAAGSFCHELALMCQVSGMDFVLEPVLSPCYARPELVERALKGRYQDAMNILGPQGRELDLLIVILPDNNGSLYGDVKRICETNLGLVSQCCLTKHVFKVNKQQYLANVALKINVKVGGRNTVLVDALARRIPLVSDIATIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPERGTVSGGMIRELLISFWRATGQKPKRIIFYRDGVSEGQFYQVLLYELDAIRKACASLESDYQPPVTFVVVQKRHHTRLFANNHNDNRAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASRGPPPGGRNTKAAGVGNVAVRPLPALKENVKRVMFYC"

     misc_feature    483..824
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /note="Glycine-rich region of argonaut; Region:
                     Gly-rich_Ago1; pfam12764"
                     /db_xref="CDD:463691"
     misc_feature    816..3452
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            945..1156
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1157..1306
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1440
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1550
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1551..1657
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1796
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1797..1913
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..2021
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2022..2093
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2094..2216
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2217..2382
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2383..2507
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2508..2645
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2646..2788
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2789..2851
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2852..2915
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            2916..3051
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            3052..3125
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            3126..3220
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            3221..3252
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
     exon            3253..3594
                     /gene="LOC100193970"
                     /gene_synonym="argonaute1; GRMZM2G162525"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atacaagagtgagagcagggagcacgagcgctctgagtgagtggaagacgagaggagttggagttccccagggctagggtttcattcgccacccgcgccgcccttcccttccccagcatccgtccgccatggtgaggaagaaaagaactggccctggagagagttctggggagtcttctggagcgcctggtcatggctcctcacagcgtcctcaggcaacacaacagggtacccgtggtggagggcaacaccagggccgtggtggatatctgggccctggagtgccgccttcacagcacccaggtggtggcccacctgagtatcatcaaccgcttgactaccagggacgtggtggatatcagggccgtggtggaccaccttcacagcatcctggtggtgggacaccccctgggtctcaaccgcgtggctaccaggggcacggtggataccagggccgtggcgggccaccttcacagtatcctggtggtgggacaccccctgggtctcaaccacgtgactaccacggacgtggtggtccgcgtcccagagggggaatgccacagtcataccgtggcgggcatgtgggaggtagtgttgtaccaagtgttccttcaggtccatctaggccagttcccgagctgcaccaagccccagatgtccaacatcaagcccctgtggtggcaacaccatcttcgccaggagctggctcgtcctcgcagcctgggaaggctgaggtgagcgctggacaagtccagcaacagttccagcagcttgcgattcgtaaccaaagcttagccagccaagctggtcagatggcaccagcgtcaagcaaatctgttaggttcccattgcgccctggcaagggtacgcatgggtccaggtgcattgtgaaggcaaatcatttctttgctgagctgcctaataaagaccttcaccaatacgatgtatcaataacacctgaggttacttcacgcggcgtcaatcgtgctgtcatggcagagctagtaaaactttacagacactcccatttggatgggcgtctgcctgcatatgatggaaggaagagtctttatacagctggagcgttgccatttgcttcgaagacattcgaaattactctgcaagatgaggaagacagtcttggtggaggccaaaggcgccagagggtatttcgggtgaccatcaaatttgctgctcgcgctgatctccaccatctggctatgtttcttgctgggaggcagccagatgcccctcaagaggctcttcaagtacttgacatcgtgctacgtgaaatgcctactgccaagtattgtcctgttggtagatcattttattctcccaagttagggagacctcagcaacttggtgaaggtttggaaacttggcgtggtttctaccaaagcataaggcccacacagatgggtctttctctgaatattgatatgtcctctactgcattttttgaggccctccctgtaattgattttgtttctcagcttcttaatagagatatctcagttagaccattgtctgattctgatcgcgtgaagattaaaaaagccctacgaggtgtgaaagtggaggtcacacaccgtggaaacatgcgtaggaaatatcggatatctggccttactccacaagcaacaagggagttatcattccctattgatgatcgtggtactgttaagactgtggtgcaatacttcctggagacttatggtttcagtattcagcacaccactttaccttgtttgcaagtgggcaatcagcaaagaccaaattatctgcctatggaggtctgtaagatagttgaggggcagcgctactcaaaacgacttaatgataaacagatcactgctctactgaaggtgacttgccaacgtccccaagcacgtgagaaggacatcttggagactgtgtatcacaatgcctactccaaggatccttatgcccaggaatttggtataacgattgatgagcgtcttgcatcggttgaagctcgtgttctgcctcccccaaggctgaaataccatgatagtggcagagaaagggatgtattgccaaaaattggccagtggaacatgatgaataagaaaatggtcaatggtggtagagttagcagctgggcatgcattaacttctcacggaatgtgcaagatggtgctgccgggagtttctgtcatgaattggctttgatgtgccaagtatcaggaatggattttgtacttgaacctgtgctgtcaccttgctatgcaaggcctgaacttgttgaaagagcactaaagggacgctatcaagatgcgatgaacatactcgggcctcagggccgagaactcgacttgctgattgttatactgcctgacaataatggttctctttacggggatgtcaaaaggatctgtgagactaatcttggattggtctcccaatgctgtctgactaaacatgttttcaaggtgaacaagcagcagtatcttgcaaatgttgccctgaaaataaatgtgaaggttgggggaaggaatactgtgcttgttgatgctttggcaaggagaatcccccttgtcagtgacatagcgactattatctttggtgctgatgtgacccatccccatcctggggaagattctagtccttccattgcagctgtggttgcttctcaagactggcctgaggttacaaagtatgcaggattggtgagtgctcaagcccatcgtcaagaattgatacaggatcttttcaaggtatggcaagatcccgaaagggggactgtctctggtggcatgatcagggagcttctcatatctttctggagggcaactggacagaaaccaaagaggatcatattctacagggatggcgtcagtgagggacaattctaccaagttctgttgtatgaacttgatgccattagaaaggcctgtgcgtcattggagtctgactaccagcctccagttacttttgtcgtggtccagaagcgtcatcacaccaggttgtttgctaataatcacaatgataatcgtgctgtcgataaaagcgggaacatactgcctggcaccgtggtggactcgaagatctgccatccaactgagtttgatttctacctgtgcagccatgctggcattcagggaacaagccgccctgcccattaccatgttctgtgggatgagaacaactttacggctgatgggttgcaaactctcaccaacaacttgtgttacacgtatgctaggtgcacacgctcagtatcgattgttcctcctgcatactatgctcacctggcagccttccgagctcggttctacatggagccagatacgagtgacagtggatctatggcaagccgtggccctccaccaggggggcgcaacaccaaggctgctggtgttgggaatgttgctgtgaggccattacctgccctcaaggaaaacgtgaagcgggtcatgttctactgctaagactgatgctgttaaggcagagctaccttttattattacagtatatcgtgaagactagagtattttttccatgtacttgatgatgctgagctaccttttattatgtcgtacgatatatatgcgtggtactggttacagt

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