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2024-03-29 08:59:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001329529            4018 bp    mRNA    linear   VRT 05-MAY-2019
DEFINITION  Ictalurus punctatus claudin-3-like (LOC108279106), mRNA.
ACCESSION   NM_001329529
VERSION     NM_001329529.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp. Biochem. Physiol. Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870801.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM870801.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="18"
                     /map="18"
     gene            1..4018
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /note="claudin-3-like"
                     /db_xref="GeneID:108279106"
     exon            1..3435
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    1069..1071
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /note="upstream in-frame stop codon"
     CDS             1096..1758
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /note="claudin 3d"
                     /codon_start=1
                     /product="claudin-3-like"
                     /protein_id="NP_001316458.1"
                     /db_xref="GeneID:108279106"
                     /translation="
MAALGLEILGISLSVLGCILSIVCCALPMWRVSAFIGNNIITAQVFWEGIWMNCVYQSTGQMQCKVYDSILALPQDLQAARALTVVAVVLGILALLVSIVGAKCTNCIEDEVAKARVMIVSGVIFITAAITQLIPVSWSANKIIREFYSPIVPEAQKREIGASLYLGWGAAAMLLVGGSILCCSCPPAEKQAKYIPASHVAYSTTKRSVAPSSYSRKDYV"
     misc_feature    1108..1638
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            3436..4018
                     /gene="LOC108279106"
                     /gene_synonym="CLDN3d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
tgggggtcccaggatcccactttgagaaccactgccatatagaatactgtgttttacaacaaatgatgttacaacagtaacaataagcctaccaaccatcagaaaaagaaggaaagtaaaataaagacaaaagtaatgttacattgttaaattaatatattaaattagtttaaatgaatgctttgaaattaatgaagagtattgaaagtgttgttttaatatttttaattgtatagatttgggattttagattttttgaaactgcagcatttatgcatttcactgtttcacaacagttagtttgtgtttgtaacaaaagagttctgttgcattactaaaactcagcccatttctccaaaacatacccataaattgttgcacacataatacgcctctttatagagatgattcattatattgctagtttttatagtctggaataaaatggttttatattctatacttgtagtgtagattcatatcagtctaaatgcataaaagatgagactgatagtttagcagtggtgataaaactgtaatactaatcatagtctgtttcttttgttcagtcccaatagtacttgcacaatgctctaagatggtcattgtctatatataaacaggacagcagagagaaattccccataacacactttgttttacacacctgccatcaccaactagactagctaaccattaaccatcaggtaacaagccaagccttggacattcattatcctgtagtttctttcaataaacaaatcattgttgaaactgtgctgtggaccaagggataattgaaagatcaggaaggaaggctgaggaaggccaaccaatgccagagctgcaccttatcatctaatgtcatttctcaggtagttcaggcttttttacggtaagcactataaagattacaagggcaggtccatgcatccagatcactctgcctcgttctgactacaatgtaacatggtgaatcaggacatgcttgtaatatatttgagttttgctatctccaggattattgacttcattctctgaataaaagtaagaaagagtgattagtgctaagtttaccagaggaacaaagacactatggctgcattggggcttgagattctgggaatatcgctctctgttctcggctgtatcctcagcattgtgtgctgcgcccttcccatgtggagggtctctgcattcattggaaataacataattacagctcaggttttctgggagggcatttggatgaactgtgtgtatcagagtaccggacagatgcagtgcaaagtctacgactccattctggctctccctcaggacctgcaggcagcccgagctctgaccgtagtggctgttgtcctgggtatcctggctcttctggtgtctattgtgggagctaagtgcaccaactgcatcgaggacgaggttgcaaaagcccgtgtgatgatcgtttctggtgtcatcttcataaccgcagccatcacgcaacttatccctgtatcctggtcggccaataagatcattcgggaattctacagtccaattgtgcctgaggcacagaagagggagattggtgcgtcactgtatttgggctggggtgctgcggccatgttgctggttggtggctcgattttgtgttgcagctgtccaccagcagaaaagcaagcgaaatatattcctgcaagccacgtggcttattccacgactaaacgttcagtggctcccagctcttacagcaggaaagactatgtatgaagacatctcagctgcattagaatgcttcaggtgattttctctgatgtcttagtggttagaaatgcagccatttgagctcaggtgtcccaagctggtcatgttttacctggagtgtttttatacaccacacatcccaatgcatggacatctaaaggacatgctgaaatgaatatttattcgtgttcttgttttcaggacattctatatattcttaagatttcattcttgtttaccattgaaccatatgtcaatttagatacagggtaagtcaataaatgtttatttgttttacttgttttattttggaacttgaactattgatattgtgatctgttgttaaaaaaaaaaaaagtttcattcctatccatttttaggccttttttatttaattataagaaatagagtaaacataatgtaacattattgcatttgtgatcacgttttaatcagtatctatgtttaaatgtactctcatgcaatcaagtttattagcatgcttgtgaatgatcaaaatattacaataaatatgtttttcaatatttcagcttagcgtcttttaaatgtataattcatgattatgccaggcatttaaatacttataaagcctatatttacaatcactgtttaacatgatatttagtcatttgcaatagcatgatattcaatactttgcgataattaactaataagtctttgctcattagtcaaatcaattgaaagtcacattaagagttcatatataacttaaaatattctctataggccaaaacattctcacatataaataatttgtatatttctgctcataatctatcatcataagtaagctgttgaaaccacacacacattttgctaacctgtctattgattagcagccttactggcatctatcagtagtgattattatcacagtctacaattgtatgtagtgatataacctgcaaaagtagccattggtatcccaacccttaagtaagcttgctagcattgcagtgaggaactatcactggagactgtggacttcaatgcaaaataaaaagctaatagctttattaaatatgtttgacagctagcttgctataggttacagaaatggattgttattagagtagctaaatgtaaatagctaagtaagtattcagatttttttattacaaaatatgttctgaaataatatattttatcaaataaaatatcatgataaaagttcatagcactaggtaaacattagctatataacttacattatttacatttacatttatctcattaagctgaagattttatccgaagttacttacgattgagacattctgtacaattgagctgtgggttaagggctaagtatctactgtaagcactataacatagataggatcctcagaccaacacactgtaaacaacccatggtcggtggatgcaatgttatgctatctacaccgttgcacagtacattcagtaaagcaataaaagtttataacaaaatagatggtaataaattaatgttttgttaaacacatacagctgtacataacttattaatgtttgcagtgtttgttccaggatcaaactgagttaacgataataacacaagaacttaagaacagcattatttgaatcctgttcacagattgcccttgtgacatagcagtaaaattgtcttagtgttttctctctctctctcagtccaaagccacactactgtatttcagagtaaacagaccataatgggtttgactacactgtctgccattcagtgaccctcacagagagtttgacagagttgttcaaagagatgtatttgaccttaaagcttagataaagttaccatgtgtagataagggtttgtttaaaaaaaaaaaaaatggagagccagaaattctgaaggaagtttggaagaaatttcactaaaagtgacagaaaaaaatggtttatgaaatagttcacaaatcaactgttagaaactgtaaacatatttcaccaaaatgacatgggaatatttttatttccttttaaatcttgcctaggcctacttcctgtagagatcatgttcagtaagaactcgtcccttaacaaacactgtggtaaaacagccaatctgcctaaaaatgtctaaacccttactaaccagttcagtttttaatcagacacatctaatcagaccatcacaggcattgtataaatgcctgtgatgctcctctgccacattcagaatgaaatttttcaatgcagtttgtttgtttttttatttattttattt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]