2024-03-29 08:59:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001329529 4018 bp mRNA linear VRT 05-MAY-2019 DEFINITION Ictalurus punctatus claudin-3-like (LOC108279106), mRNA. ACCESSION NM_001329529 VERSION NM_001329529.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 4018) AUTHORS Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z. TITLE Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets JOURNAL Comp. Biochem. Physiol. Part D Genomics Proteomics 13, 60-69 (2015) PUBMED 25681604 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KM870801.1. ##Evidence-Data-START## Transcript exon combination :: KM870801.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..4018 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="18" /map="18" gene 1..4018 /gene="LOC108279106" /gene_synonym="CLDN3d" /note="claudin-3-like" /db_xref="GeneID:108279106" exon 1..3435 /gene="LOC108279106" /gene_synonym="CLDN3d" /inference="alignment:Splign:2.1.0" misc_feature 1069..1071 /gene="LOC108279106" /gene_synonym="CLDN3d" /note="upstream in-frame stop codon" CDS 1096..1758 /gene="LOC108279106" /gene_synonym="CLDN3d" /note="claudin 3d" /codon_start=1 /product="claudin-3-like" /protein_id="NP_001316458.1" /db_xref="GeneID:108279106" /translation="
MAALGLEILGISLSVLGCILSIVCCALPMWRVSAFIGNNIITAQVFWEGIWMNCVYQSTGQMQCKVYDSILALPQDLQAARALTVVAVVLGILALLVSIVGAKCTNCIEDEVAKARVMIVSGVIFITAAITQLIPVSWSANKIIREFYSPIVPEAQKREIGASLYLGWGAAAMLLVGGSILCCSCPPAEKQAKYIPASHVAYSTTKRSVAPSSYSRKDYV"
misc_feature 1108..1638 /gene="LOC108279106" /gene_synonym="CLDN3d" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 3436..4018 /gene="LOC108279106" /gene_synonym="CLDN3d" /inference="alignment:Splign:2.1.0" ORIGIN
tgggggtcccaggatcccactttgagaaccactgccatatagaatactgtgttttacaacaaatgatgttacaacagtaacaataagcctaccaaccatcagaaaaagaaggaaagtaaaataaagacaaaagtaatgttacattgttaaattaatatattaaattagtttaaatgaatgctttgaaattaatgaagagtattgaaagtgttgttttaatatttttaattgtatagatttgggattttagattttttgaaactgcagcatttatgcatttcactgtttcacaacagttagtttgtgtttgtaacaaaagagttctgttgcattactaaaactcagcccatttctccaaaacatacccataaattgttgcacacataatacgcctctttatagagatgattcattatattgctagtttttatagtctggaataaaatggttttatattctatacttgtagtgtagattcatatcagtctaaatgcataaaagatgagactgatagtttagcagtggtgataaaactgtaatactaatcatagtctgtttcttttgttcagtcccaatagtacttgcacaatgctctaagatggtcattgtctatatataaacaggacagcagagagaaattccccataacacactttgttttacacacctgccatcaccaactagactagctaaccattaaccatcaggtaacaagccaagccttggacattcattatcctgtagtttctttcaataaacaaatcattgttgaaactgtgctgtggaccaagggataattgaaagatcaggaaggaaggctgaggaaggccaaccaatgccagagctgcaccttatcatctaatgtcatttctcaggtagttcaggcttttttacggtaagcactataaagattacaagggcaggtccatgcatccagatcactctgcctcgttctgactacaatgtaacatggtgaatcaggacatgcttgtaatatatttgagttttgctatctccaggattattgacttcattctctgaataaaagtaagaaagagtgattagtgctaagtttaccagaggaacaaagacactatggctgcattggggcttgagattctgggaatatcgctctctgttctcggctgtatcctcagcattgtgtgctgcgcccttcccatgtggagggtctctgcattcattggaaataacataattacagctcaggttttctgggagggcatttggatgaactgtgtgtatcagagtaccggacagatgcagtgcaaagtctacgactccattctggctctccctcaggacctgcaggcagcccgagctctgaccgtagtggctgttgtcctgggtatcctggctcttctggtgtctattgtgggagctaagtgcaccaactgcatcgaggacgaggttgcaaaagcccgtgtgatgatcgtttctggtgtcatcttcataaccgcagccatcacgcaacttatccctgtatcctggtcggccaataagatcattcgggaattctacagtccaattgtgcctgaggcacagaagagggagattggtgcgtcactgtatttgggctggggtgctgcggccatgttgctggttggtggctcgattttgtgttgcagctgtccaccagcagaaaagcaagcgaaatatattcctgcaagccacgtggcttattccacgactaaacgttcagtggctcccagctcttacagcaggaaagactatgtatgaagacatctcagctgcattagaatgcttcaggtgattttctctgatgtcttagtggttagaaatgcagccatttgagctcaggtgtcccaagctggtcatgttttacctggagtgtttttatacaccacacatcccaatgcatggacatctaaaggacatgctgaaatgaatatttattcgtgttcttgttttcaggacattctatatattcttaagatttcattcttgtttaccattgaaccatatgtcaatttagatacagggtaagtcaataaatgtttatttgttttacttgttttattttggaacttgaactattgatattgtgatctgttgttaaaaaaaaaaaaagtttcattcctatccatttttaggccttttttatttaattataagaaatagagtaaacataatgtaacattattgcatttgtgatcacgttttaatcagtatctatgtttaaatgtactctcatgcaatcaagtttattagcatgcttgtgaatgatcaaaatattacaataaatatgtttttcaatatttcagcttagcgtcttttaaatgtataattcatgattatgccaggcatttaaatacttataaagcctatatttacaatcactgtttaacatgatatttagtcatttgcaatagcatgatattcaatactttgcgataattaactaataagtctttgctcattagtcaaatcaattgaaagtcacattaagagttcatatataacttaaaatattctctataggccaaaacattctcacatataaataatttgtatatttctgctcataatctatcatcataagtaagctgttgaaaccacacacacattttgctaacctgtctattgattagcagccttactggcatctatcagtagtgattattatcacagtctacaattgtatgtagtgatataacctgcaaaagtagccattggtatcccaacccttaagtaagcttgctagcattgcagtgaggaactatcactggagactgtggacttcaatgcaaaataaaaagctaatagctttattaaatatgtttgacagctagcttgctataggttacagaaatggattgttattagagtagctaaatgtaaatagctaagtaagtattcagatttttttattacaaaatatgttctgaaataatatattttatcaaataaaatatcatgataaaagttcatagcactaggtaaacattagctatataacttacattatttacatttacatttatctcattaagctgaagattttatccgaagttacttacgattgagacattctgtacaattgagctgtgggttaagggctaagtatctactgtaagcactataacatagataggatcctcagaccaacacactgtaaacaacccatggtcggtggatgcaatgttatgctatctacaccgttgcacagtacattcagtaaagcaataaaagtttataacaaaatagatggtaataaattaatgttttgttaaacacatacagctgtacataacttattaatgtttgcagtgtttgttccaggatcaaactgagttaacgataataacacaagaacttaagaacagcattatttgaatcctgttcacagattgcccttgtgacatagcagtaaaattgtcttagtgttttctctctctctctcagtccaaagccacactactgtatttcagagtaaacagaccataatgggtttgactacactgtctgccattcagtgaccctcacagagagtttgacagagttgttcaaagagatgtatttgaccttaaagcttagataaagttaccatgtgtagataagggtttgtttaaaaaaaaaaaaaatggagagccagaaattctgaaggaagtttggaagaaatttcactaaaagtgacagaaaaaaatggtttatgaaatagttcacaaatcaactgttagaaactgtaaacatatttcaccaaaatgacatgggaatatttttatttccttttaaatcttgcctaggcctacttcctgtagagatcatgttcagtaagaactcgtcccttaacaaacactgtggtaaaacagccaatctgcctaaaaatgtctaaacccttactaaccagttcagtttttaatcagacacatctaatcagaccatcacaggcattgtataaatgcctgtgatgctcctctgccacattcagaatgaaatttttcaatgcagtttgtttgtttttttatttattttattt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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