LOCUS       NM_001329308            1240 bp    mRNA    linear   VRT 05-MAY-2019
DEFINITION  Ictalurus punctatus claudin 2 (cldn2), mRNA.
ACCESSION   NM_001329308 XM_017493550
VERSION     NM_001329308.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Zeng Q, Liu S, Yao J, Zhang Y, Yuan Z, Jiang C, Chen A, Fu Q, Su B,
            Dunham R and Liu Z.
  TITLE     Transcriptome Display During Testicular Differentiation of Channel
            Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis
  JOURNAL   Biol. Reprod. 95 (1), 19 (2016)
   PUBMED   27307075
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp. Biochem. Physiol. Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870788.1.
            
            On Jul 8, 2016 this sequence version replaced XM_017493550.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM870788.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04372581, SAMN04372582
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="18"
                     /map="18"
     gene            1..1240
                     /gene="cldn2"
                     /note="claudin 2"
                     /db_xref="GeneID:108279352"
     exon            1..209
                     /gene="cldn2"
                     /inference="alignment:Splign:2.1.0"
     exon            210..1240
                     /gene="cldn2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    264..266
                     /gene="cldn2"
                     /note="upstream in-frame stop codon"
     CDS             276..1118
                     /gene="cldn2"
                     /codon_start=1
                     /product="claudin-2"
                     /protein_id="NP_001316237.1"
                     /db_xref="GeneID:108279352"
                     /translation="

MAIAAVELMGFFLGILGMIGNLVATLLPYWEVSAHIGQNIVTAVTNMKGLWMACVHQSTGVFQCETFSTSLGLSTELQAARAMMVFSVIFSALACAVSSVGMQCTTCMDGFSGAKAKAAGAGGCLFFIAGLLSLIPISWQTHEVVQTFYQYTEHDGLKFEIGDCLFVGFASSIVSLLGGGLLSMSCCSYKDVQRRFRHHAGGYPYPERVGKHGTGRSASGWTPFRPSATLQSGINMNPTNRTQTMDSHYSSSSQSTTGVQDSTKPAHRKPAASYEVTGYV"

     misc_feature    288..821
                     /gene="cldn2"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      

accccatcggagcacgcgctcacacttcagcccgttaaactgggtgcaaaatatctcactccgccaatttaatgagcccctaatggggtcctgatagacttcgtggctccatttgggaaaagcaaatttgcagggcagcagtgcgttgacctcctatagggccagcaaactgacaaaagaaggcaaaaggcacaaatgggcgaatatagattgtcttcttgatttaacagctcgtgaacgaatcgctggtcatttaaagcttttaaagagcggtgatggccatagccgcagtggagttgatgggcttcttcttgggaatcctgggtatgattggaaacttagtggccaccctgctgccctactgggaagtctcggcccacatcggccaaaacatcgtcacggctgtgacgaacatgaagggcctgtggatggcgtgcgtccaccagagcacaggagtcttccagtgcgagaccttcagcacaagcctcggcctatccaccgaactgcaggcggcccgggccatgatggtcttctcagttatcttttctgccctagcctgtgcagtgtccagcgttgggatgcagtgcaccacgtgcatggacggcttctcgggagccaaggcgaaagcagctggagccggcgggtgccttttttttatcgccggtcttctgtcgctcattcccatttcctggcagacccatgaggtagtgcagaccttctaccagtacaccgaacatgacggtctgaagttcgagattggggactgcctgtttgtcgggtttgcctcgtctatagtgtctctgttaggcggagggctgctaagcatgtcctgctgcagttacaaggatgtacagcgaaggttcagacaccacgccgggggttacccgtaccccgaacgcgtaggaaaacacggcacgggccgtagcgcctcagggtggacgcccttccgcccttcagccactctgcagagcggaatcaacatgaatcccaccaacaggacccagaccatggacagccactacagtagcagcagccagtccactaccggcgtccaagactccacgaaaccggcacaccggaaaccggcagctagctatgaagtcaccgggtacgtctgaacatttggcctagctgctcttccgtaccatggatttgaaaagactgacaaacttcttcacgaacttgtttgtgaacatgtcttagatttttgctttataaattaaacacattcatattttca

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