2024-03-28 23:40:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001329290 1402 bp mRNA linear VRT 05-MAY-2019 DEFINITION Ictalurus punctatus claudin-like protein ZF-A89 (LOC108278486), mRNA. ACCESSION NM_001329290 VERSION NM_001329290.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 1402) AUTHORS Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z. TITLE Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets JOURNAL Comp. Biochem. Physiol. Part D Genomics Proteomics 13, 60-69 (2015) PUBMED 25681604 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KM870787.1. ##Evidence-Data-START## Transcript is intronless :: KM870787.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1402 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="18" /map="18" gene 1..1402 /gene="LOC108278486" /gene_synonym="CLDN29a" /note="claudin-like protein ZF-A89" /db_xref="GeneID:108278486" misc_feature 44..46 /gene="LOC108278486" /gene_synonym="CLDN29a" /note="upstream in-frame stop codon" CDS 53..688 /gene="LOC108278486" /gene_synonym="CLDN29a" /note="claudin 29a" /codon_start=1 /product="claudin-like protein ZF-A89" /protein_id="NP_001316219.1" /db_xref="GeneID:108278486" /translation="
MASAGLQVLGLALALFGLLGDIIICALPMWRVTAFIGQNIVTAQTFWEGLWMNCVMQSTGQMQCKIYDSMLALPQDLQAARALVVISILLTLFGLLLAIAGGKCTNCIEDEPTKARVSVAAGVFFLVGGVLCLIPVCWSAHTVIMDFYNPTLADARKRELGASLFVGWGAAALLLVGGALFCSQCPKTEYRGYSAKYTAPRSNAHGGGNYV"
misc_feature <182..595 /gene="LOC108278486" /gene_synonym="CLDN29a" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gtctttcccagcgttttgagattttcgattgttctcgaatcattgagaggtgatggctagtgcagggttgcaggttttgggtttggctctggcgctcttcggtttgcttggcgacatcatcatctgtgctctgcccatgtggagagtgacggccttcatcgggcagaacatcgtgaccgcgcagaccttctgggagggcctgtggatgaactgtgtgatgcagagcacgggacagatgcagtgcaaaatctatgactccatgttggctctgcctcaggacctacaggccgcgcgcgctctcgtggtcatctccatcctcctgacgctgttcggtctcctgctcgcgatcgctgggggaaagtgtacaaactgcatcgaggacgaaccgactaaggcgcgcgtgtccgtggcggccggcgtgttctttctggtgggcggtgttctgtgcctgattcctgtgtgctggtcggctcacacggtcatcatggacttctataaccctaccctggcggacgcacggaagcgcgagctcggcgcatcgctgttcgttggctggggcgccgccgctttactgctggtcggaggcgcgctcttctgctcccagtgtcctaagactgaatatcgaggttattcagccaaatacacagcgccaagatcaaatgcacatggtggtggcaactacgtgtaggtctaacgaaagcttaacattggcctgatggacaactaatgtgtcttaactaacttgtgtttttattggacagttttactaaataaacatgttttatgcaatctggcttctcttgggctgtaaaacctaaacccttaaattaggtattggattacagtagtgctcttagtttactcaactttactgtactgttgacttgattagtaacttgttcagtcaaaactacctcagcattaactaaatgaactttaaaactgcttgttctatacaattctattgtgtgaaggaccaaaggattattgtaatctgatgcaatgaggcttggaacaaaatgttcctttacacttctgtctggcagatatccttagccagagcgacttccatttctctaattcatacaactggacagttgaggattaaggccaaacaaaggattaaacaaactgctgcattatgtgaagatcctaaaatggatggaaataaaagcattaatgggtaaaatgtagtaaaaaaaaaaacccccacagatttcaaagaacactaagactgcccttacacttgaatgtcaaaatgttgactacttgtttaaccaaaaaaaaacccaaaatgtatttgagactgtctgataatctgagtctactaataaaatgttagctaagcaagaatggtagctaactagtttaattagctcaatgactggatcatctaattacc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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