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2024-03-28 21:40:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001324849             969 bp    mRNA    linear   PLN 17-APR-2022
DEFINITION  Capsicum annuum homeobox-leucine zipper protein ATHB-12-like
            (LOC107863056), mRNA.
ACCESSION   NM_001324849 XM_016708808
VERSION     NM_001324849.1
KEYWORDS    RefSeq.
SOURCE      Capsicum annuum
  ORGANISM  Capsicum annuum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Capsiceae; Capsicum.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY368484.1.
            
            On May 13, 2016 this sequence version replaced XM_016708808.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY368484.1, JW090620.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN19291622 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Capsicum annuum"
                     /mol_type="mRNA"
                     /db_xref="taxon:4072"
                     /chromosome="3"
                     /map="3"
     gene            1..969
                     /gene="LOC107863056"
                     /gene_synonym="HD-ZIP"
                     /note="homeobox-leucine zipper protein ATHB-12-like"
                     /db_xref="GeneID:107863056"
     CDS             50..712
                     /gene="LOC107863056"
                     /gene_synonym="HD-ZIP"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ATHB-12-like"
                     /protein_id="NP_001311778.1"
                     /db_xref="GeneID:107863056"
                     /translation="
MESEHEKSETPNFKRPLKKKCENAKRFTDEQVKLLESMFKLGTKIEPREKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSKFDHLNTQFESLKIEKERLLIELETLNDQLGNKLARGSKSQDSRDSELHTSPENGFTDLLELKHCAGCSNSRFGHKSVNEEDDETTEETDKYFTPKEEAEFWNLDELGDNNSLEHWCVGLGSISNSKLWDF"
     misc_feature    125..277
                     /gene="LOC107863056"
                     /gene_synonym="HD-ZIP"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(125..127,245..247,254..259,266..268)
                     /gene="LOC107863056"
                     /gene_synonym="HD-ZIP"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    281..406
                     /gene="LOC107863056"
                     /gene_synonym="HD-ZIP"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
ORIGIN      
ggcacgaggattgaaaaccgttcaccgctttctggaactcaacagtgtaatggaatcagaacatgaaaaatctgagactccaaacttcaaaagacccttaaagaagaagtgtgaaaatgcaaaaaggtttactgatgagcaagtgaagttacttgagtccatgtttaaactagggacaaagatcgagccaagagagaagctgcagttggcaagggatctcgggctgcaaccgcgccaagtagcaatttggtttcagaacaaaagggctagatggaaatcgaagcaattggaacacgaatatcggatacttcaatcaaaatttgaccatttaaatacacaattcgaatccttgaagatagaaaaggagaggttactcattgagttggagacactaaatgatcagctaggaaacaaactcgctcgaggcagcaaaagccaagattcaagagacagtgaattgcacacaagtccagaaaatggatttacagacttattagagttgaaacattgcgcgggttgttcaaattcaagattcggacacaaaagcgtaaatgaagaggatgatgaaacaacagaagaaacagacaaatacttcactcccaaagaagaagcagagttttggaacctggatgaattaggagacaacaattctttagaacactggtgtgttggtttaggtagcatctccaattccaagttgtgggacttttaatgagccccacaattgtacataactttctcaaaatgttccttcccttttcgccattaatagagccagagtagtacgtagattaggaggaatctatatctcagatatatctgtttttcttccttttcattgtgcccagagaatcagaatgtagctttattaaaatgattcgagttttagagtcgtcgtagcagaataaccgaggctttgcttgtgaatttatgaacaagatgcatgatttaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]