2024-03-28 21:40:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001324849 969 bp mRNA linear PLN 17-APR-2022 DEFINITION Capsicum annuum homeobox-leucine zipper protein ATHB-12-like (LOC107863056), mRNA. ACCESSION NM_001324849 XM_016708808 VERSION NM_001324849.1 KEYWORDS RefSeq. SOURCE Capsicum annuum ORGANISM Capsicum annuum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY368484.1. On May 13, 2016 this sequence version replaced XM_016708808.1. ##Evidence-Data-START## Transcript exon combination :: AY368484.1, JW090620.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN19291622 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..969 /organism="Capsicum annuum" /mol_type="mRNA" /db_xref="taxon:4072" /chromosome="3" /map="3" gene 1..969 /gene="LOC107863056" /gene_synonym="HD-ZIP" /note="homeobox-leucine zipper protein ATHB-12-like" /db_xref="GeneID:107863056" CDS 50..712 /gene="LOC107863056" /gene_synonym="HD-ZIP" /codon_start=1 /product="homeobox-leucine zipper protein ATHB-12-like" /protein_id="NP_001311778.1" /db_xref="GeneID:107863056" /translation="
MESEHEKSETPNFKRPLKKKCENAKRFTDEQVKLLESMFKLGTKIEPREKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSKFDHLNTQFESLKIEKERLLIELETLNDQLGNKLARGSKSQDSRDSELHTSPENGFTDLLELKHCAGCSNSRFGHKSVNEEDDETTEETDKYFTPKEEAEFWNLDELGDNNSLEHWCVGLGSISNSKLWDF"
misc_feature 125..277 /gene="LOC107863056" /gene_synonym="HD-ZIP" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(125..127,245..247,254..259,266..268) /gene="LOC107863056" /gene_synonym="HD-ZIP" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 281..406 /gene="LOC107863056" /gene_synonym="HD-ZIP" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" ORIGIN
ggcacgaggattgaaaaccgttcaccgctttctggaactcaacagtgtaatggaatcagaacatgaaaaatctgagactccaaacttcaaaagacccttaaagaagaagtgtgaaaatgcaaaaaggtttactgatgagcaagtgaagttacttgagtccatgtttaaactagggacaaagatcgagccaagagagaagctgcagttggcaagggatctcgggctgcaaccgcgccaagtagcaatttggtttcagaacaaaagggctagatggaaatcgaagcaattggaacacgaatatcggatacttcaatcaaaatttgaccatttaaatacacaattcgaatccttgaagatagaaaaggagaggttactcattgagttggagacactaaatgatcagctaggaaacaaactcgctcgaggcagcaaaagccaagattcaagagacagtgaattgcacacaagtccagaaaatggatttacagacttattagagttgaaacattgcgcgggttgttcaaattcaagattcggacacaaaagcgtaaatgaagaggatgatgaaacaacagaagaaacagacaaatacttcactcccaaagaagaagcagagttttggaacctggatgaattaggagacaacaattctttagaacactggtgtgttggtttaggtagcatctccaattccaagttgtgggacttttaatgagccccacaattgtacataactttctcaaaatgttccttcccttttcgccattaatagagccagagtagtacgtagattaggaggaatctatatctcagatatatctgtttttcttccttttcattgtgcccagagaatcagaatgtagctttattaaaatgattcgagttttagagtcgtcgtagcagaataaccgaggctttgcttgtgaatttatgaacaagatgcatgatttaaaaaaaaaaaaaaaaaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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