2024-04-20 13:26:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001318744 1479 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis UNC homeobox (uncx), mRNA. ACCESSION NM_001318744 XM_002938411 VERSION NM_001318744.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KT351730.1. On Jan 9, 2016 this sequence version replaced XM_002938411.3. ##Evidence-Data-START## Transcript exon combination :: KT351730.1, BX743598.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1479 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="9" /map="9" gene 1..1479 /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="UNC homeobox" /db_xref="GeneID:100492016" /db_xref="Xenbase:XB-GENE-920201" CDS 12..1463 /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="UNC homeobox transcription factor" /codon_start=1 /product="homeobox protein unc-4 homolog" /protein_id="NP_001305673.1" /db_xref="GeneID:100492016" /db_xref="Xenbase:XB-GENE-920201" /translation="
MMDSRILEHPHAQFGGSMSGMVGFPYPLGHHHVYELASHQLQSAAAAVPFSIDGLLNGSCTASVINPTPLLPSGCGLNGDSQQYKLSDSIDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARKELEKMEKKKRKQEKKMLRNQNRLQHSPGDMSLHTPSSDSDSGLSQNLDSSSLESSHPDMGQSRSQTQASCDQTGQAFFQSQRNTGQRDRVSDKESPVEANHNSGLCPNGRGAAFQKLNPFSVESLLSDSPPKRKTGIEFPGLTNPRTLIGKGHFLLYPITQPLGFIVPQASIKSNSAQELPSPGIKDSLHNSNSGQPSLNTSPNSAQNLYPNKHTNSTQSTTLTVCKTENGDHHGATSSSGDTGTEQLDSTYSEPKSPKSLKSDRETPECPNGSTSTCPPKPSLDCEEVDMD"
misc_feature 312..491 /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="Region: homeobox domain" misc_feature order(315..329,333..335,384..386,402..404,441..443, 447..452,459..464,468..476,480..485) /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 321..482 /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(321..323,330..332,450..452,459..464,471..473) /gene="uncx" /gene_synonym="uncx-4.1; uncx4.1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
tacccagggagatgatggacagtaggattctagagcaccctcatgcccagtttggaggctccatgagtggcatggtgggcttcccttacccactcggccaccaccatgtgtatgagttagccagccaccagctgcagtcggcagcagccgccgtgcccttctctatagacggattactgaatggttcctgcactgcatctgttatcaacccgacccccctgctcccctctggatgtgggctgaacggagacagtcagcaatacaagctgtcagactcgattgacccggacaaggaaagccccggctgcaagagaagaaggacccggaccaacttcaccggctggcagttagaggagctggagaaggctttcaatgagagtcactatccggatgtgtttatgagagaggccctggccttgaggctggacctagtggagtcccgagttcaggtctggttccaaaaccgcagagctaagtggagaaagaaagagaacaccaagaagggcccagggaggccagcccataattcccaccccaccacctgcagtggagagcccatggaccccgaggagatagccaggaaggagctggagaaaatggagaaaaagaagcgaaagcaagagaagaagatgttaaggaaccagaaccgactccagcactctccaggcgacatgtccctgcacacccccagctctgacagtgacagtggactctcccagaaccttgactccagctcactggagagcagccatcctgatatgggacaaagcagaagccaaacccaagcaagctgtgaccaaacaggacaagcctttttccaaagccaaagaaacacaggacaaagggacagggtcagtgacaaggagtcaccggttgaagccaaccacaactcaggcttgtgcccaaatgggagaggcgctgccttccagaaactcaatcccttcagcgtagaaagcctgttgtctgactctccccccaaacggaagacagggatagaatttccaggtttaacgaacccccgaaccttaattgggaagggacattttctgctgtaccccatcacccaacctctgggatttatagtaccgcaggcttccattaaatccaactcagcccaggaactgcccagtcctgggattaaggactctcttcataacagtaactcgggtcagcccagtctaaatacctccccgaactcagcacagaacttataccccaacaaacacacgaactcaacccagagcaccactctaacagtatgtaagactgagaatggtgaccaccatggggcaacctccagctctggagacacagggactgagcagttggacagcacatattctgagccaaagtctcccaagtccctgaaaagcgacagagagaccccagagtgtccgaatggctcaacttctacctgcccgcccaaacccagcttagactgtgaagaggtagatatggactaagcctcccctcatcctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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