2024-04-20 11:51:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001309978 1318 bp mRNA linear VRT 12-SEP-2020 DEFINITION Fundulus heteroclitus homeobox A2b (hoxa2b), mRNA. ACCESSION NM_001309978 XM_012862546 VERSION NM_001309978.1 KEYWORDS RefSeq. SOURCE Fundulus heteroclitus (mummichog) ORGANISM Fundulus heteroclitus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ469738.2. On Jun 19, 2015 this sequence version replaced XM_012862546.1. ##Evidence-Data-START## Transcript exon combination :: DQ469738.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02116571, SAMN03775336 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1318 /organism="Fundulus heteroclitus" /mol_type="mRNA" /db_xref="taxon:8078" /chromosome="3" /map="3" gene 1..1318 /gene="hoxa2b" /gene_synonym="Hoxa2x" /note="homeobox A2b" /db_xref="GeneID:105926292" CDS 121..1110 /gene="hoxa2b" /gene_synonym="Hoxa2x" /note="homeobox A2x; Hox A2b; Homeobox protein Hox-A2" /codon_start=1 /product="homeobox protein Hox-A2b" /protein_id="NP_001296907.1" /db_xref="GeneID:105926292" /translation="
MSYAFGRESGFINSRPSLAECLTSLANPVGDAFQSPSIKSSTPIPPPPFEQTIPSLKPSVHPRCKRDLKGHGPLEAAPLPTEYPWMKEKKSIKRSQATASSVAAAASDLSPQGSPERPESAVGPTECSGASKRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTEKQVKVWFQNRRMKHKRQSHCKENRDSDGKYPAGLEDEMEPAEESGALPQRERSSLHQNTLTSQQGPNGHNGQNHSPPSCNEKNPTHFTSPAPVCASTIGPDNAQSPGLDASLQDLYVFSPSASFSSDSSQSPLPLSSETFSLFSETLTTMDLQNLSY"
misc_feature order(514..528,532..534,583..585,601..603,640..642, 646..651,658..663,667..675,679..684) /gene="hoxa2b" /gene_synonym="Hoxa2x" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(520..522,529..531,649..651,658..663,670..672) /gene="hoxa2b" /gene_synonym="Hoxa2x" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 523..681 /gene="hoxa2b" /gene_synonym="Hoxa2x" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cgcccgggccggtgtcagaataaaacgcgtgttattttcccgaacccttgtttttccacgccgaatctgcgcttttttttttttttttttaccctccatcacaacaacaagcaggaggacatgagttacgcattcggccgagagagcggtttcatcaacagccggccgtcgctcgccgagtgcctgacatctctcgccaaccccgtcggagacgcgtttcaaagtccatcaatcaagagctcgacaccgattccccctcctcccttcgagcagaccatcccgagcttgaagcccagcgtccacccacgctgcaagcgggatctgaaaggccacggtccgctggaggctgcgcctctgcccacggagtacccgtggatgaaggagaagaaaagcatcaagagaagccaggctactgcctcttccgtcgccgcagcagcgtctgacctctctccccaaggttctcctgagaggccggagagcgctgtcggtcctactgagtgttcgggggcatccaagaggctgaggaccgcgtacaccaacacccaactcctggagcttgagaaggagtttcacttcaacaaatacctgtgcagacccaggcgggtggagatagccgcgctgctggatttgacggagaagcaggtgaaagtgtggtttcagaacaggcggatgaagcacaaaaggcagagccactgcaaggagaacagggacagcgacggcaaatatcccgcgggcctggaggacgagatggagccggccgaggagagcggcgcgctcccgcagagggagcggtccagtttgcaccaaaacaccctgacttcacaacagggtccgaacggacacaatggacagaaccacagccctccgagctgcaatgagaaaaatcccacacattttaccagcccagcacccgtctgcgcgtcaacaataggcccggacaatgcccagtcccccggcctggacgcctctttgcaggatttgtacgttttctccccctcggcttctttctcgtcggattcatcgcagagtccgttgcctttatcgtccgaaacgttcagccttttctcagagacactcacaacaatggacctgcaaaatctcagctactgaaaatccgcttccgttttatattcaattcaatccctttattcagtttttcgtatgtgggaaataataaaagaaagaccctcacgcaaggtgagttaatgaccacattcaggtttatttttatattcatctgagattattatgtttcttgaaataaatttgtacaagtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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