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2024-03-29 07:59:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001287791            3376 bp    mRNA    linear   PLN 18-OCT-2018
DEFINITION  Solanum lycopersicum Argonaute 3 (AGO3), mRNA.
ACCESSION   NM_001287791 XM_004233160
VERSION     NM_001287791.1
KEYWORDS    RefSeq.
SOURCE      Solanum lycopersicum (Lycopersicon esculentum)
  ORGANISM  Solanum lycopersicum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Xian Z, Yang Y, Huang W, Tang N, Wang X and Li Z.
  TITLE     Molecular cloning and characterisation of SlAGO family in tomato
  JOURNAL   BMC Plant Biol. 13, 126 (2013)
   PUBMED   24011258
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JX467708.1.
            
            On Dec 19, 2013 this sequence version replaced XM_004233160.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JX467708.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04384497, SAMN06134382
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Solanum lycopersicum"
                     /mol_type="mRNA"
                     /db_xref="taxon:4081"
                     /chromosome="2"
                     /map="2"
     gene            1..3376
                     /gene="AGO3"
                     /note="Argonaute 3"
                     /db_xref="GeneID:101247981"
     CDS             84..3083
                     /gene="AGO3"
                     /note="argonaute RISC catalytic component 3"
                     /codon_start=1
                     /product="Argonaute 3"
                     /protein_id="NP_001274720.1"
                     /db_xref="GeneID:101247981"
                     /translation="
MDRGNNNGRGGDRKRGRNSDRVPGHNEQRQGPARGYYDPSQYRARAYYEEEQGRARGQHEEEQGRARVQHEQEQGRGRGRGGRDAFQMGSSSSNQPRPSDQHQFTETVAPENQLVSQTPVATGMNWLNAARKGAGTASPPPQQQQKDAPVLLGKITLKDSKKREPMGRPDGGNTSDESVSLHANHFPVDFNDGTIILHYDVDVQKVDGDQPGKSVTDRFDLRKIREKWLMDKPAEFPCDKTAYDGIRNIYSAVDLPAKPLTVNCSVEDDAKEYKYILTFKLVAQLQLDNVTEYLRRSLQNIIPRDVLQGMDLVMKENPRRCRISVGRCFYSNSARTSFNGGVAARKGFQQSLKLTSEGLALCLDYSELLVIPEQIPVIEFLENYYGKNIDDIFKYTRAGASDLLVGLKVKVTHRPNKQKFVIKELLPGETRTVKFKLQDTGEEVLLVDYFDKNYTPKIKNRHLPSLNIGKGDKDNYVPMEFCDLVEGQRFPKDLLKTTSLEPKTRRDLIRETVLAKDGPRMTIPDNFKIRVDDNMTQISGRILPVPVLKLGGQNPPPNLNYKTCQWNLVGKSVVEGKALQRWALIDFSSKGCRDSLKLQVDEFVVKLKDRCTQLSINMDIPAVVHLTDMNELSTVGKVENLLKVVTDAAEKKLQGKLQMILCVMTSKHNGYKYLKWVSETKIGIVTQCCLSSNANKGHNQYIVNLCMKINAKLGGSNMELMERLPNFRSDDNVMFIGADVNHPAGKDADKYPSIAAVVATINWPAANKYAARVSPQKSRTEKIIEFGKMCKDLVLTYEKRNSVKPNKIVVFRDGVSDSQFDMVLNEELTDLANAIYESNKYQPAITLVVAQKRHHTRLFPKEGNVSPGTVVDTQIVHPSGFDFYLCSHYGQLGTSKATHYHVLYDDNGFISVDLQRLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRMFQEVLMEMKSPRSTTSSSEASSSSSSPIDSFAQEFYDLHHDLKDIMFFV"
     misc_feature    1053..1181
                     /gene="AGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1206..1538
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1341..1343,1386..1388,1419..1421,1431..1433,
                     1485..1487,1506..1508,1512..1514)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1647..2936
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2094..2096,2106..2108,2142..2153,2160..2162,
                     2184..2186,2193..2195,2205..2207,2217..2219)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2298..2300,2304..2306,2520..2522,2907..2909)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
acttcatcattctcaacgcaaaaactttacaagaatttacagttgctagttttctttctctcttacttaaaaaatactcgcaaatggaccgtggaaacaacaacggacgtggtggagaccgtaaacgtggtcgtaattctgatcgtgttcctggtcacaatgaacagagacaaggccctgctcgtggttactacgacccgagccaataccgtgctcgtgcttactacgaagaggaacaaggccgtgctcgtggtcagcacgaagaggaacaaggccgtgctcgtgttcagcacgaacaggaacaaggccgtggacgtggtcgtggtggaagggatgcgtttcagatgggttcatcttcatctaaccagcccaggccatcggatcagcatcagtttactgagactgtggctccggaaaatcagctggttagtcagactccggtagctactggtatgaattggctcaatgctgccagaaaaggtgctggtactgcttcaccaccgccacaacaacaacaaaaggatgctccagttcttctggggaaaataactctgaaggattcaaaaaaacgtgaacctatgggacgacctgatggtggaaacacttctgacgagtctgttagcctgcatgctaatcactttcctgttgattttaatgacggaactatcattttgcattatgatgtggatgtacaaaaggttgatggggatcagcctgggaagtcagtaacagacaggtttgatctccgtaagataagagaaaagtggttgatggataagcctgctgaatttccttgtgataaaactgcatatgacggtattagaaacatttacagtgctgttgatcttcctgctaagcctttaactgtgaactgctctgttgaggatgatgctaaggaatacaagtacatacttaccttcaagcttgttgctcaattacaacttgacaacgtgactgaatatttgagacgaagcctccagaatattattcctcgtgatgtactgcaaggaatggatttggttatgaaagaaaatcctaggaggtgcaggatttctgtaggtcgttgtttctactctaacagtgctcgcacatcttttaatggcggggttgctgcacgtaaaggttttcagcagagcctaaagctaacatctgaaggtcttgcgttgtgcttagattactcagaactcttggtaatcccggaacaaattccagtgatagaatttcttgagaattattatgggaaaaatatagacgacattttcaagtatacaagagcaggtgcaagtgatttattggttggtctgaaagtcaaagtaactcatcgtcctaacaagcagaagtttgtcatcaaggagctacttccaggagaaactcgtactgttaaatttaaacttcaagatacgggagaggaggttttgcttgttgactacttcgataaaaattatacccctaaaattaagaacaggcatttaccttcactaaatattggaaaaggtgataaggacaactatgtcccgatggaattctgtgacttggttgagggacaacgatttcctaaggatcttttgaaaacaacctcccttgaacccaaaacgagaagggatttaatacgtgagacggtactggctaaagatgggccgcgcatgactattcccgataattttaagattcgtgttgatgacaacatgacccaaatttcgggtcgtattcttcctgtccctgttttgaagctaggcggtcaaaatccaccacctaatttgaattataagacatgccagtggaatcttgttgggaaatctgtggtggaaggcaaggcacttcaacgatgggctttgatagattttagctctaagggatgcagggattccttgaagctacaagttgatgaatttgtcgtgaaattgaaagatcggtgcacgcaattgagtattaatatggacatccctgctgtagtacatttaactgacatgaatgagctctctactgttggcaaggttgaaaatctcctcaaagttgtgactgatgcagctgaaaaaaaattacagggtaaacttcaaatgatactttgtgttatgacatcaaagcataatgggtacaagtatcttaagtgggtatctgagacaaaaattggcattgtaacccaatgttgcttgtcttctaatgccaacaagggacataatcaatatattgtcaacctctgtatgaagattaatgcaaaacttgggggcagcaatatggaacttatggaaagactcccaaatttcagaagtgatgacaatgtcatgttcattggagctgatgttaatcatcctgctggcaaggatgctgacaaatatccatccatagcagctgttgttgccaccatcaactggccggctgctaataaatatgccgctagagtttctccacagaaatccaggactgaaaagattatagagtttgggaaaatgtgtaaagacctagttcttacttatgagaaacgcaactctgttaaaccaaacaaaattgttgttttccgtgatggtgtgagtgacagtcagtttgatatggtactcaacgaagagttgactgatctggctaacgctatatacgaaagtaataagtatcaaccagcaatcactcttgttgtggctcagaagagacaccatacacgactatttcctaaggagggaaatgtgtctccgggtactgttgtggatacacaaattgttcatccatctggttttgacttctatctttgcagccactatggacagttgggtactagcaaggcaactcactatcatgttctatatgatgataatggcttcatatctgtcgatttacaacgtcttatatacaacatgtgcttcacttttgcacggtgcactaaacctgtttcacttgttccaccagtttactatgcagaccttgttgcttacaggggacggatgttccaagaggtgcttatggagatgaaatctcctaggtctacgacttcatcctctgaagcttcatcgtcatcatcttcaccaattgactcatttgcacaagaattttatgatttgcaccatgatttgaaggacataatgtttttcgtttgatgacagtccggttcgctctttgatctctttcaccattcccacactggggaggagatggttgtctacattttggagatgcccttttcatcggagtttctaatgggatttcatgcttcttttatttcctgtgtcataatggttttatttactttgagggtgtctggagctggaggccactgcccagtatgtctacttaaattgtgtgatgctttctaatatgtatcgtgagagaaaaagttgaatttcgtttaatgtacttgtttttgagctaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]