LOCUS       NM_001286321            1269 bp    mRNA    linear   VRT 04-JUL-2021
DEFINITION  Haplochromis burtoni distal-less homeobox 5a (dlx5a), mRNA.
ACCESSION   NM_001286321 XM_005928587
VERSION     NM_001286321.1
KEYWORDS    RefSeq.
SOURCE      Haplochromis burtoni (Burton's mouthbrooder)
  ORGANISM  Haplochromis burtoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Haplochromis.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S.
  TITLE     Ancestral and derived attributes of the dlx gene repertoire,
            cluster structure and expression patterns in an African cichlid
            fish
  JOURNAL   Evodevo 2 (1), 1 (2011)
   PUBMED   21205289
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FN667601.1.
            
            On Nov 1, 2013 this sequence version replaced XM_005928587.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FN667601.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00761590, SAMN00761594
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Haplochromis burtoni"
                     /mol_type="mRNA"
                     /db_xref="taxon:8153"
     gene            1..1269
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="distal-less homeobox 5a"
                     /db_xref="GeneID:102296998"
     exon            1..531
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    138..140
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="upstream in-frame stop codon"
     CDS             174..1031
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="distal-less homeobox protein 5a; distal-less
                     homeobox 5"
                     /codon_start=1
                     /product="homeobox protein Dlx5a"
                     /protein_id="NP_001273250.1"
                     /db_xref="GeneID:102296998"
                     /translation="

MTGVFDRRIPSVKSADFESSFQLSSMHHPSQESPTLPESSATDSGYYSPAGGVAHGYCSPSSTSYGKPLNAYQYQYPGVNGSAGNYSTKSYTDYSSYTTPSYHQYAGTYSRVQAQPSPQEKEISEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIWFQNRRSKMKKIMKNGELPPEHSPSSSDPMACNSPQSPAVWDTQGPSRPHSLQPQSINTTASNFLENTGSWYTSAGSSMTSHLQTPNSIQHSLALGAGTLY"

     misc_feature    264..527
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    order(588..602,606..608,657..659,675..677,714..716,
                     720..725,732..737,741..749,753..758)
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    594..755
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(594..596,603..605,723..725,732..737,744..746)
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            532..716
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /inference="alignment:Splign:2.0.8"
     exon            717..1256
                     /gene="dlx5a"
                     /gene_synonym="dlx5"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      

cagtcttcaccagagcccgacggcctgagagcctttcaacaatgtcagtgtagtttttttttacaccgctctggagacagacgctctcggtttttattattgatttttttttctttcgtgtttttttccctgctgattaaataaaaacgaacccacgcgctctctctcgaagtatgaccggagtttttgaccggaggatcccgagtgtgaaatctgcagactttgagagctcatttcaactctccagcatgcaccatccgtctcaggaatctcctactttacccgaatcctccgccacggattctggctactacagtccggctggaggagtcgctcacggctactgctcgcccagctccacctcttacgggaagcctctgaatgcctatcagtaccagtacccgggtgtaaatggatctgctggaaattactcgacaaaatcctacacagattacagctcctacacgaccccctcctaccaccagtatgctgggacttacagcagagtgcaagcccagccgagtccacaagaaaaagagataagcgagcctgaggtgaggatggtgaatggcaagccgaagaaagtgagaaaaccccggacaatctactccagcttccagctggccgccttgcagaggcggtttcagaacacacagtacctggcgctgccggagagagccgaactggccgcctcgctggggctaacgcaaacacaggtgaaaatttggttccaaaacagaagatcaaagatgaagaagatcatgaaaaacggcgagcttcccccggaacacagccccagctccagcgaccccatggcctgcaactctccacagtccccggccgtctgggacacacagggtccctccaggccgcacagtctacagccacaaagtatcaacacgacggcttctaactttttggaaaacacggggtcatggtacacctcagccggcagctccatgacttcccacctgcagacccctaactcaatacagcattcgttggctcttggagcggggacgttatattgaaaaaaaagaaaagaaaagaaactacactaaacaaaaaacaaacctattgttgatttcatttccccctccttctatgggactcgtgttcagatttcagaggaatatgcaatgtatttgatggcagtcatagaagaaacgtgtaaaatgtgtaaatgtgtgcatgtaatttattgcattttggaagactattaaacgtttaaatggacaatggaactttgaaccccaaaaaaaaaaaaaa

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