2024-04-25 19:26:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001286315 1639 bp mRNA linear VRT 12-APR-2020 DEFINITION Haplochromis burtoni distal-less homeobox 3b (dlx3b), mRNA. ACCESSION NM_001286315 XM_005932807 VERSION NM_001286315.1 KEYWORDS RefSeq. SOURCE Haplochromis burtoni (Burton's mouthbrooder) ORGANISM Haplochromis burtoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis. REFERENCE 1 (bases 1 to 1639) AUTHORS Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S. TITLE Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish JOURNAL Evodevo 2 (1), 1 (2011) PUBMED 21205289 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FN667598.1. On Nov 1, 2013 this sequence version replaced XM_005932807.1. ##Evidence-Data-START## Transcript exon combination :: FN667598.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00628004, SAMN00761590 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1639 /organism="Haplochromis burtoni" /mol_type="mRNA" /db_xref="taxon:8153" gene 1..1639 /gene="dlx3b" /gene_synonym="dlx3" /note="distal-less homeobox 3b" /db_xref="GeneID:102307675" exon 1..453 /gene="dlx3b" /gene_synonym="dlx3" /inference="alignment:Splign:2.0.8" CDS 111..956 /gene="dlx3b" /gene_synonym="dlx3" /note="distal-less homeobox protein 3b; distal-less homeobox 3" /codon_start=1 /product="homeobox protein Dlx3b" /protein_id="NP_001273244.1" /db_xref="GeneID:102307675" /translation="
MSAGQTYEKKIASILTDLPGSMSCHPNSKDSPTLPESSVTDMGYYSGQTAHGHHEYYQSQPYGQPMNSYHHQFNLNGMGAAGAYATKSEYPYTNGYRQYGHYNRDHLQASPPGSVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNASDSMACNSPPSPAVWDNSSTPQNTPISRPQVPQPTHSSSPPYLEDYNNHWYQQGSHLQHPGAVHHPVPQQSVGAVY"
misc_feature 195..446 /gene="dlx3b" /gene_synonym="dlx3" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(510..524,528..530,579..581,597..599,636..638, 642..647,654..659,663..671,675..680) /gene="dlx3b" /gene_synonym="dlx3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 516..677 /gene="dlx3b" /gene_synonym="dlx3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(516..518,525..527,645..647,654..659,666..668) /gene="dlx3b" /gene_synonym="dlx3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 454..638 /gene="dlx3b" /gene_synonym="dlx3" /inference="alignment:Splign:2.0.8" exon 639..1621 /gene="dlx3b" /gene_synonym="dlx3" /inference="alignment:Splign:2.0.8" ORIGIN
ttcaaagagcgcgcacacagcagttctgcgtcgcgaatttgctttgcacaatccgcagaagaaaggatccaccagtggactttctttattctggggggactgctttcacaatgagcgccggacagacgtacgagaagaagattgcgagtattttgaccgatctcccaggatctatgagttgccatccgaactccaaggactcccctactctgcccgagtcgtccgtgacggacatgggctactacagtggacagacggcccacggccatcatgaatattatcagagtcagccgtacgggcagcccatgaactcttaccatcaccagtttaatctgaacggaatgggagctgctggagcgtatgccaccaaatctgaatacccatacacgaatggctacagacagtacggacattacaacagagatcacctgcaagcttcacctccgggctcagtgaaagaggagccagagccggaggttcgtatggtaaatggaaagccgaaaaagattcgcaagccgaggacgatctactctagctaccagcttgctgctctgcagagacgcttccagaaggcacaatacctcgccctgcctgaaagagcggagctggcggctcagcttggccttactcagacgcaggtcaagatctggttccagaaccggagatccaagttcaagaagctgtacaaaaacggcgaggttcccttggagcacagccccaatgccagcgactccatggcctgcaactccccgccatcgcccgctgtctgggacaacagcagcacccctcagaacaccccgatcagcagacctcaggtgccgcagccgacgcacagttcatcgccgccgtacctggaggattataataaccactggtaccagcagggatcacacctacaacacccgggagccgtgcaccacccagtcccgcagcaaagcgtgggagctgtttattaacactgactcaagagcagatttctgtcttcggttttatttcaaacgaggtctctccacaatgactctgcagagaaaacgatgactggaccgggagacaaacctgagatgaaacattgctgtgttttttttttgttttttttttttagatgatcaagaatgtttcagaactgggtttccattcacaaaagcacataagggatttctgatcacttgtggcagcatatttaacggacatctggcgtgtttttaaattatttatcgcttcagttttttccttaccttcttttgtaaatgaataaatggtaaatatgcaagtttttttttaaataaataagatgcctatacacaaaccgaataatagcaaaaagaaaaacagaaaaacaaaacaaaaaacaaaactgtgcggttgatccatgctacatcaaatcttgtgggcttgtagagagcgctcaaaacaactcaggtcatatttatatggatttgtacaaaatgtcgaaggctgtaaatatgtgtttatatgcagaaccactatgatcatatttgttcaaacggaacgactgcactgtggtgctttcaaaaaccttctttgttttttgttttttttatattcatgtaattagtccacttgttgccttcctgtcaattgaataaaggtgttaattgtaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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