2024-04-26 07:36:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001284471 1496 bp mRNA linear MAM 03-FEB-2021 DEFINITION Canis lupus familiaris pancreatic and duodenal homeobox 1 (PDX1), mRNA. ACCESSION NM_001284471 XM_543155 VERSION NM_001284471.2 KEYWORDS RefSeq. SOURCE Canis lupus familiaris (dog) ORGANISM Canis lupus familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 1496) AUTHORS Takemitsu H, Yamamoto I, Lee P, Ohta T, Mori N and Arai T. TITLE cDNA cloning and mRNA expression of canine pancreatic and duodenum homeobox 1 (Pdx-1) JOURNAL Res Vet Sci 93 (2), 770-775 (2012) PUBMED 22172402 REMARK GeneRIF: These results confirm that similar to humans, Pdx1 plays an important role in expression of insulin gene in canines. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAAUVH010000302.1 and HQ454506.1. On May 9, 2015 this sequence version replaced NM_001284471.1. ##Evidence-Data-START## Transcript exon combination :: HQ454506.1, AB196439.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4547739, SAMN11526751 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-21 JAAUVH010000302.1 11875875-11875895 c 22-986 HQ454506.1 22-986 987-1496 HQ454506.1 988-1497 FEATURES Location/Qualifiers source 1..1496 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="25" /map="25" /breed="Labrador retriever" gene 1..1496 /gene="PDX1" /gene_synonym="IPF1; PDX-1" /note="pancreatic and duodenal homeobox 1" /db_xref="GeneID:493994" /db_xref="VGNC:VGNC:44396" exon 1..501 /gene="PDX1" /gene_synonym="IPF1; PDX-1" /inference="alignment:Splign:2.1.0" CDS 99..947 /gene="PDX1" /gene_synonym="IPF1; PDX-1" /note="pancreatic duodenal homeobox gene 1; insulin promoter factor 1, homeodomain transcription factor; pancreatic and duodenum homeobox 1" /codon_start=1 /product="pancreas/duodenum homeobox protein 1" /protein_id="NP_001271400.1" /db_xref="GeneID:493994" /db_xref="VGNC:VGNC:44396" /translation="
MNSEEQFYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPPFPGTLGALEQGSPPDISPYEVPPLADDSAVAHLHHHLPAQLALPHPPAGPFPEGAEPAALEEPSRVQLPFPWMKSTKAHAWKGQWAGGAYVAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRSCGTAPGGVADAEPEQDCAVSSGEELLALPPALPPGGAVPPAVPAAAREGRLPPGLSASPQPSSVAPVRPQEPR"
misc_feature order(534..548,552..554,603..605,621..623,660..662, 666..671,678..683,687..695,699..704) /gene="PDX1" /gene_synonym="IPF1; PDX-1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 540..701 /gene="PDX1" /gene_synonym="IPF1; PDX-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(540..542,549..551,669..671,678..683,690..692) /gene="PDX1" /gene_synonym="IPF1; PDX-1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 502..1483 /gene="PDX1" /gene_synonym="IPF1; PDX-1" /inference="alignment:Splign:2.1.0" ORIGIN
aaagcgagcaggggtggcgctgggagtgggagcgctgcacggctccagctccccggctccagctccctactcctggcctccaagacccggccgcagccatgaacagcgaggagcagttctacgcagcgacgcagctctacaaggacccgtgcgccttccagcggggcccggctcccgagttcagcgccagtccccctgcgtgcctgtacatgggccgccagcccccgccgccgccgcccccgttcccggggacgctgggagctctggagcagggcagccccccggacatctccccgtacgaggtgcctcccctggccgacgactccgcggtggcgcacctccaccaccacctcccagctcagctcgcgctcccccacccgccggccgggcccttcccggagggagccgagccagcagccctggaggagcccagccgcgtccagctgcctttcccgtggatgaagtctaccaaggctcacgcctggaaaggccagtgggcaggcggcgcctacgttgcagagccagaagaaaacaaacggactcgcactgcctacactcgcgcccagctgctggagctggagaaggagttcctgttcaacaaatacatctcgaggccacgcagggtggagctggccgtcatgctgaacttgaccgagaggcacatcaagatctggtttcagaaccgccgcatgaaatggaaaaaggaggaggacaagaagcgcagctgcggtacagcgcccgggggcgtcgcggacgcggaaccagagcaggactgtgcggtgagctcgggggaggagctgctggcactgccgccggcgctgcccccggggggtgctgtgccgcctgctgttcccgccgctgcccgggaaggacgtctgccgccgggcctgagtgcctcgccgcagccgtccagtgtggcgcccgtgcgaccgcaggagccccggtgagagatgggggctcctccttgccaggcggtttcaaccactggtaaagaaggggggagcaggcgtaggaccccgggtgtagacaaccagctctggcccttcaaggggttgggaactgcagaggacaccccagatggaaggggagaacttgagttctcaggcccctgtgctaactgggacgccttagagagacactgggagaccttctggaagaagaggagaggctttctgttatatctggggcctcttccggtgatattgttggattggtgacatctgctgctgtgcaggtcctagcactccagaaccatggacctctttagagaagccagctcttcaaaagacaacaggaactacaagtcggaatgccctccaacacattttgcaggcaagctggacggagcaccttcatctgtcccgaaacagagccatttttactcaggcttccaccttaaagcttagaaataattgaaaggaaatatctaaggtttcaaagacctagtgaaattgatgcctgtggaatagaatgattcctcctcaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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