2024-04-26 12:31:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001281609 1302 bp mRNA linear ROD 17-DEC-2022 DEFINITION Mesocricetus auratus LIM homeobox 1 (Lhx1), mRNA. ACCESSION NM_001281609 XM_005076921 VERSION NM_001281609.1 KEYWORDS RefSeq. SOURCE Mesocricetus auratus (golden hamster) ORGANISM Mesocricetus auratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus. REFERENCE 1 (bases 1 to 1302) AUTHORS McCann KE, Sinkiewicz DM, Norvelle A and Huhman KL. TITLE De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters JOURNAL Sci Rep 7, 40472 (2017) PUBMED 28071753 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1302) AUTHORS Rudnick A, Ling TY, Odagiri H, Rutter WJ and German MS. TITLE Pancreatic beta cells express a diverse set of homeobox genes JOURNAL Proc Natl Acad Sci U S A 91 (25), 12203-12207 (1994) PUBMED 7991607 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from X81407.1. On Aug 1, 2013 this sequence version replaced XM_005076921.1. ##Evidence-Data-START## Transcript exon combination :: X81407.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1302 /organism="Mesocricetus auratus" /mol_type="mRNA" /db_xref="taxon:10036" gene 1..1302 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="LIM homeobox 1" /db_xref="GeneID:101828732" exon 1..181 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /inference="alignment:Splign:2.1.0" CDS 12..1232 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="Homeobox protein LMX-2; Homeobox protein Lim-1; LIM homeobox protein 1" /codon_start=1 /product="LIM/homeobox protein Lhx1" /protein_id="NP_001268538.1" /db_xref="GeneID:101828732" /translation="
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW"
misc_feature 21..176 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="The first LIM domain of Lhx1 (also known as Lim1) and Lhx5; Region: LIM1_Lhx1_Lhx5; cd09367" /db_xref="CDD:188753" misc_feature order(21..23,30..32,84..86,93..95,102..104,111..113, 162..164,171..173) /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188753" misc_feature 198..365 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="The second LIM domain of Lhx1 (also known as Lim1) and Lhx5; Region: LIM2_Lhx1_Lhx5; cd09375" /db_xref="CDD:188761" misc_feature order(198..200,207..209,264..266,273..275,282..284, 291..293,351..353,360..362) /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188761" misc_feature 393..578 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="propagated from UniProtKB/Swiss-Prot (P63008.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 495..497 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P63007; propagated from UniProtKB/Swiss-Prot (P63008.1); phosphorylation site" misc_feature order(552..566,570..572,621..623,639..641,678..680, 684..689,696..701,705..713,717..722) /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 558..719 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(558..560,567..569,687..689,696..701,708..710) /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature <798..>1157 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="chromosomal replication initiator protein DnaA; Region: dnaA; cl42516" /db_xref="CDD:455861" misc_feature 891..1127 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /note="propagated from UniProtKB/Swiss-Prot (P63008.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 182..408 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /inference="alignment:Splign:2.1.0" exon 409..686 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /inference="alignment:Splign:2.1.0" exon 687..852 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /inference="alignment:Splign:2.1.0" exon 853..1295 /gene="Lhx1" /gene_synonym="Lim-1; Lim1; lmx2" /inference="alignment:Splign:2.1.0" ORIGIN
aaccaaagaccatggtgcactgtgcgggctgcaaaaggcccatcctggaccgtttcctcttgaacgtgctggacagggcctggcatgtcaagtgcgtccagtgctgtgaatgtaaatgcaatctgaccgagaagtgcttctcccgggaaggcaagctctactgtaaaaacgacttcttccgatgtttcggtaccaaatgcgcaggctgtgcgcagggcatctctccaagcgatctggttcggagagcacgaagcaaggtgtttcatctcaactgcttcacctgcatgatgtgtaacaagcagctctccaccggagaggagctctatatcatcgatgagaacaagttcgtttgcaaagaggattacctgagtaacagcagtgtcgccaaagagaacagcctccattctgccaccacaggcagtgaccctagtttatcgcccgattcccaagacccatcgcaggatgatgccaaggactctgaaagtgccaacgtgtcagacaaggaaggcggaagcaatgaaaatgatgaccagaacctaggtgccaagcgcaggggaccccgaaccacgatcaaagccaagcagctggagacattgaaggcagcctttgcagctacacccaagcccacgcgacacatccgtgagcaactggcccaggagactggcctcaacatgcgtgtaatccaggtctggttccagaatcgacgttccaaggagcgaaggatgaagcagctaagcgccctgggcgcgcggcgccacgcctttttccgcagtcctcgccggatgcgaccgctggtggaccgcctggagccaggcgagctcattcccaacggccccttctccttttacggagattaccagagcgagtactatggtcccgggggcaactacgacttctttccgcaaggaccaccgtcctcgcaggcccagacaccagtggacctacccttcgtgccatcatctgggccttcagggacgccgctgggaggtctggaccacccgctgcctggccaccacccttccagcgaggcgcagcgattcaccgacatcttggcacatcccccaggggactcgcctagtcctgaacccagtctgcccgggcctctccactccatgtcagcggaggtcttcgggcccagtccacccttctcatctctgtcggtcaatggcggggccagctacgggaaccacctgtcccatcctcctgaaatgaacgaggcagccgtgtggtagcgggccttgcgtgggccacgggagctcgtggttgtacagagacgagcttttatttaaaaaaaaggaattc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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