2024-05-04 16:58:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001251903 1229 bp mRNA linear PRI 09-MAY-2023 DEFINITION Pan troglodytes PRELI domain containing 1 (PRELID1), mRNA; nuclear gene for mitochondrial product. ACCESSION NM_001251903 XR_127751 VERSION NM_001251903.3 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from DC522812.1 and JAQQLN010000023.1. On May 9, 2023 this sequence version replaced NM_001251903.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments to chimp transcript DC522812.1 and human NM_013237.2. ##Evidence-Data-START## Transcript exon combination :: GABD01010297.1, GABC01005255.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-478 DC522812.1 1-478 479-508 JAQQLN010000023.1 86957680-86957709 509-622 JAQQLN010000023.1 86958726-86958839 623-701 JAQQLN010000023.1 86958953-86959031 702-1229 JAQQLN010000023.1 86959277-86959804 FEATURES Location/Qualifiers source 1..1229 /organism="Pan troglodytes" /mol_type="mRNA" /db_xref="taxon:9598" /chromosome="5" /map="5" gene 1..1229 /gene="PRELID1" /gene_synonym="VIM; vimentin" /note="PRELI domain containing 1" /db_xref="GeneID:737446" /db_xref="VGNC:VGNC:57599" exon 1..282 /gene="PRELID1" /gene_synonym="VIM; vimentin" /inference="alignment:Splign:2.1.0" misc_feature 152..154 /gene="PRELID1" /gene_synonym="VIM; vimentin" /note="upstream in-frame stop codon" CDS 191..850 /gene="PRELID1" /gene_synonym="VIM; vimentin" /codon_start=1 /product="PRELI domain-containing protein 1, mitochondrial" /protein_id="NP_001238832.1" /db_xref="GeneID:737446" /db_xref="VGNC:VGNC:57599" /translation="
MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIXHREVTPDQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLASKAATKKQQQQQQFV"
misc_feature 236..706 /gene="PRELID1" /gene_synonym="VIM; vimentin" /note="PRELI-like family; Region: PRELI; pfam04707" /db_xref="CDD:398400" exon 283..508 /gene="PRELID1" /gene_synonym="VIM; vimentin" /inference="alignment:Splign:2.1.0" exon 509..622 /gene="PRELID1" /gene_synonym="VIM; vimentin" /inference="alignment:Splign:2.1.0" exon 623..701 /gene="PRELID1" /gene_synonym="VIM; vimentin" /inference="alignment:Splign:2.1.0" exon 702..1229 /gene="PRELID1" /gene_synonym="VIM; vimentin" /inference="alignment:Splign:2.1.0" ORIGIN
ggaagtggcncgcggccggacaactcatggcggcggcggcggcagctgcttgggcgcggtgcggtggtgactgagctacgagcctggcggcgggtgtgcgccgagccccggccaggcccggcccccgcgtgcctcccaggctccgcacccctgatgctgcgcgggtgctgagcccgcttcggccgggacgatggtgaagtatttcctgggccagagcgtgctccggagttcctgggaccaagtgttcgccgccttctggcagcggtacccgaatccctatagcaaacatgtcttgacggaagacatantacaccgggaggtgacccctgaccagaaactgctgtcccggcgactcctgaccaagaccaacaggatgccacgctgggccgagcgactatttcctgccaatgttgctcactcggtgtacatcctggaggactctattgtggacccacagaatcagaccatgactaccttcacctggaacatcaaccacgcccggctgatggtggtggaggaacgatgtgtttactgtgtgaactctgacaacagtggctggactgaaatccgccgggaagcctgggtctcctctagcttatttggtgtctccagagctgtccaggaatttggtcttgcccggttcaaaagcaacgtgaccaagactatgaagggttttgaatatatcttggctaagctgcaaggcgaggccccttccaaaacacttgttgagacagccaaggaagccaaggagaaggcaaaggagacggcactggcagctacagagaaggccaaggacctcgccagcaaggcagccaccaagaagcagcagcagcagcaacagtttgtgtagccagtccaccaccaccacagcaccccagacagctaggcttagcccctctgccctcccttcattgtactttatcattaaaaatcaacttccagccctgtctgctgtctacgtggtgggttgtggggatgcagtttggcatctgcagtacaccaagcacatgattcatgtctgagccaggtctgcttattctcccattgggcagctgaggaccgaggcacagaggtgcggtgacttgcccggggctccaggtagcctgcaggttaactggcggtaagtgctaggctgtaagcccgacaagggcagggcttttggttttgttctctgatgtgtctcagtatctagcacataatagacactcaataaatacttgttgaattca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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