2024-04-20 07:18:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001246413 2174 bp mRNA linear PRI 20-FEB-2022 DEFINITION Pan troglodytes claudin 11 (CLDN11), mRNA. ACCESSION NM_001246413 XM_003310097 XM_516873 VERSION NM_001246413.1 KEYWORDS RefSeq. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. REFERENCE 1 (bases 1 to 2174) AUTHORS Kim RN, Kim DW, Choi SH, Chae SH, Nam SH, Kim DW, Kim A, Kang A, Park KH, Lee YS, Hirai M, Suzuki Y, Sugano S, Hashimoto K, Kim DS and Park HS. TITLE Major chimpanzee-specific structural changes in sperm development-associated genes JOURNAL Funct. Integr. Genomics 11 (3), 507-517 (2011) PUBMED 21484476 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK306887.1. On or before Oct 10, 2011 this sequence version replaced XM_516873.3, XM_003310097.1. ##Evidence-Data-START## Transcript exon combination :: AK306887.1, GABC01004101.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01120800, SAMN01120804 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2174 /organism="Pan troglodytes" /mol_type="mRNA" /db_xref="taxon:9598" /chromosome="3" /map="3" gene 1..2174 /gene="CLDN11" /gene_synonym="claudin-11" /note="claudin 11" /db_xref="GeneID:460846" /db_xref="VGNC:VGNC:1780" exon 1..425 /gene="CLDN11" /gene_synonym="claudin-11" /inference="alignment:Splign:2.1.0" misc_feature 164..166 /gene="CLDN11" /gene_synonym="claudin-11" /note="upstream in-frame stop codon" CDS 200..823 /gene="CLDN11" /gene_synonym="claudin-11" /note="claudin 11 (oligodendrocyte transmembrane protein)" /codon_start=1 /product="claudin-11" /protein_id="NP_001233342.1" /db_xref="GeneID:460846" /db_xref="VGNC:VGNC:1780" /translation="
MVATFLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSAHV"
misc_feature 215..715 /gene="CLDN11" /gene_synonym="claudin-11" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 426..590 /gene="CLDN11" /gene_synonym="claudin-11" /inference="alignment:Splign:2.1.0" exon 591..2160 /gene="CLDN11" /gene_synonym="claudin-11" /inference="alignment:Splign:2.1.0" ORIGIN
agcgctgctgtcgccgccgtgcgcccttcgccgctgagctcgcagcctccggcgcccacctccacctccagtgtcccgcctcgggccgtcgccctccagcggctcgcgagcgtgggagacgtacctgggcaggcactgtccagcccaggcccaggcacagccgtgaggggcgaggcacggggacatcctggcggccaccatggtggccacgtttctgcaggtggtgggcttcgtcacgagcttcgtgggctggatcggcgtcatcgtgaccacctccaccaatgactgggtggtgacctgcggctacaccatccccacctgccgcaagctggatgagctgggctccaaggggctgtgggccgactgcgtcatggccacggggctgtaccactgcaagcccctggtggacatcctcatcctgccgggctacgtgcaggcctgccgcgccctgatgattgctgcctcggtcctgggtctgccggccattttactgctgctgactgttcttccctgcatccggatgggccaggagcccggtgtggctaagtacaggcgggcccagctggctggtgttttgctcattctgctggctctctgcgcccttgttgccaccatctggttccctgtgtgcgcccaccgtgagaccaccatcgtgagctttggctactccctgtatgcaggctggattggtgctgtgctgtgcctcgtgggtggctgtgtcatcctctgctgtgctggagatgcccaggcctttggtgaaaaccgtttctactacactgcgggctctagctccccgactcatgcgaagagtgcccacgtataagagggctgcccggctgcccacagaggtgctgtagatgctgggcccagggccctaggtttgctcgtcacagtgtggggaagcccattcctctgccaggctctaaagccaaaggtctagaaaagcatcctgtctggcattttgtagtcttaacttctccccatttcccccatcttttggttgccttaaaagaaatctctagctcagataatgcccagacatttttttcccatggtgttgccactattagctcttttcttgggcattcttttgctgtttattaaaaatatattatatatattttgtttctttaaatttcaaatgttttgcaaacatcactgagttaggtgggggtggggaagagaaatacaagacacttttttttttttttttttttttttaaatagggccttactctgttgctcaggctggagtgcggtggtgtgatctcggctcatgtagcctcaacctccctggctcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcgttcactactacacccagctaatttttaagttttttgtagagatgagggctccctatgttgcccaggttggtctggaactcctggactcaaagtatcctcccgcctcggcctcccaaagtgttgggattataggagtgagccaccacaccggccaagatgcttttcaaactgatacagatgacaatgggagcctcataaagatggcttttgtttcttcccttcaaggtcatttacttgtacgagacagaaaaagatagcattggggacatgggatgagggagggagggcaatagtggaacgaactttccatgggaaactttcccttttgtaagttgagggccaggggtagggatattttttagtttgtgattttgcatttatctgtacatactttttcaagattgatcatttttataaccatggttttcctgaaatcctcagttcatcaatatgaaggaaatgaaccacatagactttatgcaataaataacagtgcaagtgagtataactttaactgatgttccacaaaacatttttgatttcaggtttatatgatgtagtttttaatcgtacattttcatatgcttcaaactaacacatttttaaagctttcccccacttttctctctatttgcattgttagccatcttgaagtgatgttgtttaacataagttgtactgttgaatttggctttacgggtgtaaacactgatggtatatcagtatctgagaccccagactctccaaatactgatggtgcattttattcttgaagtgaaatctgtgcaataaaataacagactgtctgcaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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