2024-03-29 19:06:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001246273 627 bp mRNA linear VRT 29-JUN-2020 DEFINITION Oncorhynchus mykiss claudin 30 (LOC100642186), mRNA. ACCESSION NM_001246273 VERSION NM_001246273.1 KEYWORDS RefSeq. SOURCE Oncorhynchus mykiss (rainbow trout) ORGANISM Oncorhynchus mykiss Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. REFERENCE 1 (bases 1 to 627) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 627) AUTHORS Kelly SP and Chasiotis H. TITLE Glucocorticoid and mineralocorticoid receptors regulate paracellular permeability in a primary cultured gill epithelium JOURNAL J. Exp. Biol. 214 (Pt 14), 2308-2318 (2011) PUBMED 21697422 REFERENCE 3 (bases 1 to 627) AUTHORS Chasiotis H and Kelly SP. TITLE Effect of cortisol on permeability and tight junction protein transcript abundance in primary cultured gill epithelia from stenohaline goldfish and euryhaline trout JOURNAL Gen. Comp. Endocrinol. 172 (3), 494-504 (2011) PUBMED 21549120 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BK007968.1. ##Evidence-Data-START## Transcript exon combination :: BK007968.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..627 /organism="Oncorhynchus mykiss" /mol_type="mRNA" /db_xref="taxon:8022" /chromosome="24" /map="24" gene 1..627 /gene="LOC100642186" /note="claudin 30" /db_xref="GeneID:100642186" CDS 1..627 /gene="LOC100642186" /codon_start=1 /product="claudin 30" /protein_id="NP_001233202.1" /db_xref="GeneID:100642186" /translation="
MASAGFQMLGTALGIIGWIGAIVVCALPQWKVTAFIGENIITAQTTWQGIWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALIIISIMMGLVGILLSVAGGKCTNCVEDERAKSRIGVGSGVVFIIAGILCLIPVCWSANTIIRDFYNPMLMSSQKMELGAALYIGWGAAALMIMGGGFLCANCPPKEDNYPTKYSAARSTAPKDYV"
misc_feature 13..543 /gene="LOC100642186" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 1..627 /gene="LOC100642186" /inference="alignment:Splign:2.1.0" ORIGIN
atggcatctgctgggtttcagatgttgggcacagccctgggtatcattggctggatcggggccatcgtggtctgtgctcttcctcaatggaaggtcacagccttcatcggcgagaacataatcacagcccaaaccacttggcaaggcatctggatgaactgtgtggtccagagtacaggtcagatgcagtgtaaggtatacgactccatgctggcactaccccaggacctccaggccgctcgtgctctcatcatcatctctatcatgatgggcctggtgggcatcctgctctccgtggccgggggcaagtgcaccaactgcgtggaggatgagagggccaaatccagaataggcgtgggctcgggtgtagttttcatcatcgctggcatcctgtgtctcatccccgtctgctggtcggccaacaccatcatcagggacttttacaaccccatgctgatgagctctcagaagatggagctgggggctgcgctctacatcggatggggggccgcggccctcatgatcatgggaggagggttcctctgtgccaactgtccccctaaagaggacaattaccccactaagtactcagctgccaggtccacagcacccaaggactatgtttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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