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2024-03-29 19:06:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001246273             627 bp    mRNA    linear   VRT 29-JUN-2020
DEFINITION  Oncorhynchus mykiss claudin 30 (LOC100642186), mRNA.
ACCESSION   NM_001246273
VERSION     NM_001246273.1
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus mykiss (rainbow trout)
  ORGANISM  Oncorhynchus mykiss
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Kelly SP and Chasiotis H.
  TITLE     Glucocorticoid and mineralocorticoid receptors regulate
            paracellular permeability in a primary cultured gill epithelium
  JOURNAL   J. Exp. Biol. 214 (Pt 14), 2308-2318 (2011)
   PUBMED   21697422
REFERENCE   3  (bases 1 to 627)
  AUTHORS   Chasiotis H and Kelly SP.
  TITLE     Effect of cortisol on permeability and tight junction protein
            transcript abundance in primary cultured gill epithelia from
            stenohaline goldfish and euryhaline trout
  JOURNAL   Gen. Comp. Endocrinol. 172 (3), 494-504 (2011)
   PUBMED   21549120
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BK007968.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BK007968.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Oncorhynchus mykiss"
                     /mol_type="mRNA"
                     /db_xref="taxon:8022"
                     /chromosome="24"
                     /map="24"
     gene            1..627
                     /gene="LOC100642186"
                     /note="claudin 30"
                     /db_xref="GeneID:100642186"
     CDS             1..627
                     /gene="LOC100642186"
                     /codon_start=1
                     /product="claudin 30"
                     /protein_id="NP_001233202.1"
                     /db_xref="GeneID:100642186"
                     /translation="
MASAGFQMLGTALGIIGWIGAIVVCALPQWKVTAFIGENIITAQTTWQGIWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALIIISIMMGLVGILLSVAGGKCTNCVEDERAKSRIGVGSGVVFIIAGILCLIPVCWSANTIIRDFYNPMLMSSQKMELGAALYIGWGAAALMIMGGGFLCANCPPKEDNYPTKYSAARSTAPKDYV"
     misc_feature    13..543
                     /gene="LOC100642186"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            1..627
                     /gene="LOC100642186"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggcatctgctgggtttcagatgttgggcacagccctgggtatcattggctggatcggggccatcgtggtctgtgctcttcctcaatggaaggtcacagccttcatcggcgagaacataatcacagcccaaaccacttggcaaggcatctggatgaactgtgtggtccagagtacaggtcagatgcagtgtaaggtatacgactccatgctggcactaccccaggacctccaggccgctcgtgctctcatcatcatctctatcatgatgggcctggtgggcatcctgctctccgtggccgggggcaagtgcaccaactgcgtggaggatgagagggccaaatccagaataggcgtgggctcgggtgtagttttcatcatcgctggcatcctgtgtctcatccccgtctgctggtcggccaacaccatcatcagggacttttacaaccccatgctgatgagctctcagaagatggagctgggggctgcgctctacatcggatggggggccgcggccctcatgatcatgggaggagggttcctctgtgccaactgtccccctaaagaggacaattaccccactaagtactcagctgccaggtccacagcacccaaggactatgtttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]