LOCUS       NM_001164940            2551 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Saccoglossus kowalevskii homeobox 9/10 (hox9/10), mRNA.
ACCESSION   NM_001164940
VERSION     NM_001164940.1
KEYWORDS    RefSeq.
SOURCE      Saccoglossus kowalevskii
  ORGANISM  Saccoglossus kowalevskii
            Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae;
            Saccoglossus.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Aronowicz J and Lowe CJ.
  TITLE     Hox gene expression in the hemichordate Saccoglossus kowalevskii
            and the evolution of deuterostome nervous systems
  JOURNAL   Integr. Comp. Biol. 46 (6), 890-901 (2006)
   PUBMED   21672793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ985451.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ985451.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Saccoglossus kowalevskii"
                     /mol_type="mRNA"
                     /db_xref="taxon:10224"
     gene            1..2551
                     /gene="hox9/10"
                     /note="homeobox 9/10"
                     /db_xref="GeneID:100303540"
     exon            1..173
                     /gene="hox9/10"
                     /inference="alignment:Splign:1.39.8"
     exon            174..269
                     /gene="hox9/10"
                     /inference="alignment:Splign:1.39.8"
     exon            270..1098
                     /gene="hox9/10"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    342..344
                     /gene="hox9/10"
                     /note="upstream in-frame stop codon"
     CDS             348..1367
                     /gene="hox9/10"
                     /codon_start=1
                     /product="homeobox 9/10"
                     /protein_id="NP_001158412.1"
                     /db_xref="GeneID:100303540"
                     /translation="

MTTAGSAFCVNSLISSEENEALLRNPADIPSAGNQPIDSKCGLLIPKTTEPAMASAAAQGMSLHSSSANLYPSGGDQNTYTNAWYYPSTEQNYASMQVTGLHDTEYDSNPYGFSIGAQKNYDSSSLMSSNSNFYPFQARQGYDRYHTNGYPTTNGTGIHHVEYGNLKYNTITQRQRYSGSYPYENTNSYSSPMSSSSSSACRLQNSKTNLAATSPTSTGSESRSPAKSEGSPIGTNNNNNSTNSTTPKTEVTRNSPSDIGDQPTWLTTTASGRKKRCPYTKFQTLELEKEFLFNMYLTRERRVDIARLLNLTERQVKIWFQNRRMKLKKQNQRNATMLH"

     misc_feature    order(1164..1178,1182..1184,1233..1235,1251..1253,
                     1290..1292,1296..1301,1308..1313,1317..1325,1329..1334)
                     /gene="hox9/10"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    1170..1331
                     /gene="hox9/10"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(1170..1172,1179..1181,1299..1301,1308..1313,
                     1320..1322)
                     /gene="hox9/10"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1099..2525
                     /gene="hox9/10"
                     /inference="alignment:Splign:1.39.8"
ORIGIN      

ccaagacttgcttaaccgacgactacccagtgcgcagacgacaccatagctgagtcagtcccatgctttaacgcacgcggcttattttaagtgtttaaaggctgattcgggaggcgacgtgtttctatagaaaccaggtaggaaccccgccgtgtcagtgcacataaggacagtatcgcgagtttggctacagtactcgccgtcgctacattctcgaaaatatgtgttcaagaaaggtcattttagttcgttccattcgattgcttcggggtcatctgcagttttatcactagtgacactgtattgactggctttaccgtggtgaatatacgaggcgaacataaaaaatgacaacagcgggttcggctttttgtgtgaattctctcatcagctcggaggagaacgaagcattgctgcggaatccggctgacatcccgtcggcagggaaccagccgatcgactcaaaatgtggactgctaatccccaaaacaacggagccggcgatggcatctgcagccgcccagggaatgagcctgcactcgtcttcagcaaatctgtacccgagcggcggcgatcaaaacacctatacgaacgcctggtactacccgagcacggagcagaactatgcctcgatgcaagtgactggacttcacgatacagagtacgactcaaatccctacggattttcaattggagcacagaaaaactatgactccagttccctgatgtcgtccaactcaaatttctacccgtttcaggcgaggcaaggatacgatcgctaccatacgaatggatacccgacaaccaacggaacagggatacaccacgtcgagtacggaaatctcaagtacaacacgataacacagagacagcgatattcgggttcatatccgtatgaaaacaccaattcttactcgtcgccaatgtcttcgtcctcttcgtcagcgtgtcgactccagaactcaaagacaaacttggcagctacgagtccaaccagtactggcagtgaaagccgctcgccagccaaaagcgaaggtagccccatcggcaccaataataacaacaacagcaccaattctacaacaccgaaaacagaagtgaccagaaattcaccgtctgatattggcgaccaacctacgtggttgacaacgacagcttctgggcgcaaaaagagatgtccctacaccaaattccaaacactcgagttggagaaggagttcttattcaacatgtacctaacgcgagagcgaagggtggatatcgcgagattactgaacctgaccgaacgacaggtcaaaatttggttccaaaatagaaggatgaaattgaagaagcagaaccaacgaaatgccactatgcttcactaattatcaaagacattgttaaactttgaactttgaactatttagtattacttccggcgttgctggatgactcgctctgatgtttgaattccggtgtcggtgcgcaaatgtcttctaaacacmccgtgtgcacgcatgccatatttgtcacatgacgaacgctggaacgagataaactattcagtataacgcagtcgtataacaatgaacagaatgtgcgtggagttgccatggtgatgtaaaatgaacttattttaaagtgatgtttttcctgcatatttaaaaaaaacctacatggtcagattataagagagggagagagaacttttaatcatgtgactgacatgtgactgacatgtgactaacatttcaaagactactcagcatgttacgtagtctaattttaatttgtattyttgtttgtgggtatcttgggttattttaaattgtacgagaatcctcgtaattgtaatagtagtggcggcgattataatgtgccctggatgtgtctatattggctttgtaaaaaaaataaaataataagtaaaaaaaaaactaatctatgcttgttgggtcccttactgccatattatacacgtaggtcttcaaataagccatataaagtaatttaaatgccatataaggtgtgtagatcaccttatatggcaaatrgattgcgatatatgtaaatcaagttaccttatccgtcaatgtgacatgtaaggggtagtagtttatttgaaatgtcacgtgactctgcaccatttatttttattcaggtttattcaaattttgtttacttaaaatgtcgtctgcctcctacgcatcccttgacgtaatttgtttacgtacagaactatgtgaatattttcagtttaactggtcttaattatcgtttagaaaaacgtatatttataatttaatttttgatagcgaacattttgaatttgtttaatgttttacggtcgctcttttggtagcagtatcgaaagccctttttaacaaggtcacgtggtctgggggaattcaatggctgctttgcgctcggctgtacaggctatcattacgggtgttgctttctttgtgaatggaggaaggttaaatgtttactgtgtttctgttgtttttttcgaagtaaagacatgttctgtttacctataaaaaaaaaaaaaaaaaaaaaaaaaaaa

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