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2024-03-29 23:43:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001146383            1344 bp    mRNA    linear   VRT 12-JAN-2022
DEFINITION  Salmo salar Claudin-5 (cld5), mRNA.
ACCESSION   NM_001146383
VERSION     NM_001146383.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Ramberg S, Hoyheim B, Ostbye TK and Andreassen R.
  TITLE     A de novo Full-Length mRNA Transcriptome Generated From
            Hybrid-Corrected PacBio Long-Reads Improves the Transcript
            Annotation and Identifies Thousands of Novel Splice Variants in
            Atlantic Salmon
  JOURNAL   Front Genet 12, 656334 (2021)
   PUBMED   33986770
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  AUTHORS   Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao
            NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF.
  TITLE     Salmo salar and Esox lucius full-length cDNA sequences reveal
            changes in evolutionary pressures on a post-tetraploidization
            genome
  JOURNAL   BMC Genomics 11, 279 (2010)
   PUBMED   20433749
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT056482.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT056482.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa11"
                     /map="ssa11"
     gene            1..1344
                     /gene="cld5"
                     /note="Claudin-5"
                     /db_xref="GeneID:100286444"
     misc_feature    182..184
                     /gene="cld5"
                     /note="upstream in-frame stop codon"
     CDS             203..520
                     /gene="cld5"
                     /codon_start=1
                     /product="Claudin-5"
                     /protein_id="NP_001139855.1"
                     /db_xref="GeneID:100286444"
                     /translation="
MLSACLEFLGMGLCLLGSLLVMVACGLPMWKVTAFIDMNIVVAQTIWDGLWMSCVVQSTGHLHWLGGHSQGGLPQQICPHQDHLGQWRLRQETLCVGEERRDLRT"
ORIGIN      
gggagagtggattcagaccagccagagagcctatataccttattaaacaggttcttctcctagcctctctttgatcatctattacaagcctaacatttctagagcgaataggagaaagagattattttgatattcgagtggatattaaattacatttgtattcactctcctctttctgttttaaagaagaaaaaggctcaccatgctctctgcatgtctggagttccttgggatggggttgtgcctactgggctcgctcctggtcatggtcgcgtgcgggctgcccatgtggaaggtgacggcgttcatcgatatgaatatcgtggtagcgcagaccatctgggacgggctctggatgtcgtgcgtggtgcagagcacgggccatctacattggctgggcggccacagccaagggggcctaccccaacaaatatgcccccaccaagaccatctcggccaatggagacttcgacaagaaacattatgtgtaggtgaggagaggagagatttacgcacatgaaaacttggcacgggagctggacggacaagttgtctacttagcctactgtttgatgcccattgcgtatgttatctttattgtgtttccctagaacggaggcttcgatgagggacattatgtgtaggcgagatgatgtcaggatacgttttttttcctttgctttgattgtcatggcgacttcaccaaaatgtccaactttttttctgtgttgtaggctacaactttgtttaggggtctggccatgggttcattggtctgatgatcagaaaaggaaaaattcaattttttgccaaaggaatggaaccctatgcgcgccgagattgtagctcaagactgaccaagaaattgaaacagttgttgtgtagtctatctattgtgtaccatttttttaagacttaaatcttgtatttgcacatgattattttaaaatgttaatgttcatgtggttatcgtttgacactagtctattgtctcgccagagttggctgtcacggtctgtgtgctctgtgaataaagcccattgttctccactggctttactgtgtctgcttggaagttttaaataaccacataatgtacatgtttgcagagaccggtaatcgttaacatgtttagattcccacactggactcctcctttgtaacacagtgaatgctactcagacaaatgttcactcatatgatgatcaaaggagcttatttgcatttgaatgctgttgtattttattgcatggctgagtgtgtatctatcttttgtcctagccctccttatagtactgggcaattgttgttttataataaaaaagaaagtcccaattcacaatc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]