LOCUS       NM_001146065             885 bp    mRNA    linear   INV 19-FEB-2022
DEFINITION  Bombyx mori special homeobox protein 1 (shx1), mRNA.
ACCESSION   NM_001146065
VERSION     NM_001146065.1
KEYWORDS    RefSeq.
SOURCE      Bombyx mori (domestic silkworm)
  ORGANISM  Bombyx mori
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata;
            Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Ou J, Deng HM, Zheng SC, Huang LH, Feng QL and Liu L.
  TITLE     Transcriptomic analysis of developmental features of Bombyx mori
            wing disc during metamorphosis
  JOURNAL   BMC Genomics 15, 820 (2014)
   PUBMED   25261999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Chai CL, Zhang Z, Huang FF, Wang XY, Yu QY, Liu BB, Tian T, Xia QY,
            Lu C and Xiang ZH.
  TITLE     A genomewide survey of homeobox genes and identification of novel
            structure of the Hox cluster in the silkworm, Bombyx mori
  JOURNAL   Insect Biochem Mol Biol 38 (12), 1111-1120 (2008)
   PUBMED   19280701
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU284708.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GBJR01006775.1, ICPK01045566.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16712263, SAMN16712264
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Bombyx mori"
                     /mol_type="mRNA"
                     /db_xref="taxon:7091"
                     /chromosome="6"
                     /map="6"
     gene            1..885
                     /gene="shx1"
                     /note="special homeobox protein 1"
                     /db_xref="GeneID:100271933"
     CDS             1..885
                     /gene="shx1"
                     /codon_start=1
                     /product="special homeobox protein 1"
                     /protein_id="NP_001139537.1"
                     /db_xref="GeneID:100271933"
                     /translation="

MNTSDGAPQVPSTSSYNHQEQSVMPENPVLTNAEAQHKNIRLQPPNQQSCFIRGSNGANVYINNNTNPYMSMLSAPTWPTQGTGVPRLVNPAQTWNNIAVNKVNNGGAKKPKRVRTAFTSNQMTELEQEYTRTKYLDRARRLELAEILQLNERTIKIWFQNRRMKEKKILTERLGESEETSTTASSPDLGPLPIYHNYTFNNLRFTERSQPAQPYSIMPTYGHQTLLQPPTVNGMVASSTGAPGTGLQQLKLQDFEVNQPIGNSMQASTPPMPNTNNMSWDLSWIHSMNTQYEY"

     misc_feature    331..501
                     /gene="shx1"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(334..348,352..354,403..405,421..423,460..462,
                     466..471,478..483,487..495,499..504)
                     /gene="shx1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(340..342,349..351,469..471,478..483,490..492)
                     /gene="shx1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..36
                     /gene="shx1"
                     /inference="alignment:Splign:2.1.0"
     exon            37..885
                     /gene="shx1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgaatacaagcgacggtgcgcctcaagttccttcgacttcatcttacaatcatcaggaacagtctgtgatgccggaaaaccccgttctcacgaacgcagaagcacaacacaaaaacatcagacttcagcctccgaatcagcagtcatgctttattcgcggctcaaacggagctaacgtatacattaacaacaacacaaatccatacatgagtatgttaagtgctccgacatggccaacacaaggtacaggtgttccgcgacttgtgaatccagcacaaacatggaacaacattgctgtaaacaaagttaacaatggaggcgccaaaaaaccaaagcgtgtgagaacagcattcactagcaaccaaatgacggaactagagcaagaatacactcgcacaaagtacctagaccgggcacgtcgcttggagctggcggaaatcttacagctcaacgagaggaccataaaaatatggttccagaacagaagaatgaaagagaaaaagattttgacggagcgcttaggagagtctgaagaaaccagcacgactgcttcttcgccagatttaggcccacttccaatatatcacaactatacattcaataacctaaggtttactgaacgaagtcaaccagcacaaccttattcgatcatgccgacctatggacatcaaacgttacttcagcctccgacagtaaatggaatggttgccagttcaacaggagctcccgggacagggctccaacaactaaagttacaggattttgaggttaatcagcctattggaaattcaatgcaagcgagcacaccgcccatgccgaataccaataatatgtcctgggacttatcctggattcacagtatgaacacccaatatgaatattga

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