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2024-03-29 20:43:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001141665            1046 bp    mRNA    linear   VRT 28-JUN-2020
DEFINITION  Salmo salar homeobox protein HoxC11ab (hoxc11ab), mRNA.
ACCESSION   NM_001141665
VERSION     NM_001141665.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D.
  TITLE     Differential evolution of the 13 Atlantic salmon Hox clusters
  JOURNAL   Mol. Biol. Evol. 25 (7), 1333-1343 (2008)
   PUBMED   18424774
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF695259.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF695259.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa15"
                     /map="ssa15"
     gene            1..1046
                     /gene="hoxc11ab"
                     /note="homeobox protein HoxC11ab"
                     /db_xref="GeneID:100196636"
     exon            1..804
                     /gene="hoxc11ab"
                     /inference="alignment:Splign:2.0.8"
     CDS             101..1021
                     /gene="hoxc11ab"
                     /codon_start=1
                     /product="homeobox protein HoxC11ab"
                     /protein_id="NP_001135137.1"
                     /db_xref="GeneID:100196636"
                     /translation="
MFNSVNLGNFCSQTRKDRTSEFGDRTGCASNIYLPNCTYYVPEFSAVSTFLPQASSRQITYPYSSNLPQVQPVREVSYGLDPSSKWHHRSNYASCYSGEDLVHRDCLPSSTMTEMLMKTNENVYSHHHHHHHHPSSNHSSTGFYPGVGKNNVLPQGFDRFFETAYCGADNQSAENCLHKSEASKLETESQQPAALLGAPDQDKDPEDEEEHTHSGSCTSSATKDGSASKNSHSSRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL"
     misc_feature    224..610
                     /gene="hoxc11ab"
                     /note="Protein of unknown function (DUF3528); Region:
                     DUF3528; pfam12045"
                     /db_xref="CDD:432284"
     misc_feature    order(803..817,821..823,872..874,890..892,929..931,
                     935..940,947..952,956..964,968..973)
                     /gene="hoxc11ab"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    809..970
                     /gene="hoxc11ab"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(809..811,818..820,938..940,947..952,959..961)
                     /gene="hoxc11ab"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            805..1046
                     /gene="hoxc11ab"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
gcgacttagacggattgcgcgtcatcttgccttcctaaattttccccttctgcagttcgaatccaaaacatttatctatagtacggagtacgggggaaagatgtttaactcggtgaatctgggaaacttctgctcccagacgcgcaaagaccggacatccgagtttggggacagaacgggctgcgcctcaaacatctacctcccgaactgcacctactacgtccccgaattttccgccgtctctacgtttcttccacaggcctcgtcgcggcagataacctacccatattcctcaaatctgcctcaagtgcagccggtacgggaagtttcctatggattggacccttctagtaaatggcaccatagaagcaattatgcatcatgctactctggagaggatctggtgcacagggactgtcttccgtcatccaccatgacagaaatgcttatgaaaactaacgagaatgtgtacagtcaccaccaccaccaccaccaccatcccagctccaaccattcctccacagggttctaccccggcgtggggaaaaacaacgtcctccctcaaggtttcgaccgctttttcgagaccgcatactgcggcgcggacaatcagtcagcagagaattgtttacataagagcgaggctagtaaactggaaacagagtcccagcagccagcggctctactgggcgccccagaccaggacaaggacccagaggatgaggaggaacatacacattcgggctcgtgtacttcttcagccacgaaggacggcagtgccagcaagaacagccactcgagtaggaagaagagatgtccatactccaaatttcagattcgagaattggagcgggagttcttctttaatgtttacatcaataaagagaaacggctgcagctttcccggatgctgaacctcaccgaccgacaggttaaaatctggtttcagaatcgaagaatgaaagaaaagaaattaagcagagatcgtttgcaatatttttctggaaaccctctattgtgagcatgtgaggagtgttaaagcatag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]